| line |
count |
pod |
subroutine |
|
92
|
1 |
n/a |
BEGIN |
|
93
|
1 |
n/a |
BEGIN |
|
94
|
1 |
n/a |
BEGIN |
|
96
|
1 |
n/a |
BEGIN |
|
98
|
1 |
n/a |
BEGIN |
|
99
|
1 |
n/a |
BEGIN |
|
220
|
4 |
Yes |
new |
|
240
|
4 |
n/a |
__checkAndStoreArgs |
|
301
|
4 |
n/a |
__init |
|
631
|
2116 |
Yes |
findTerms |
|
674
|
2116 |
n/a |
__checkAndStoreFindTermsArgs |
|
888
|
3 |
Yes |
discardedGenes |
|
905
|
20087 |
n/a |
__databaseIdIsInBackground |
|
915
|
2124 |
n/a |
__isUsingPopulation |
|
925
|
4 |
n/a |
__population |
|
936
|
16 |
n/a |
__origNameInPopulation |
|
946
|
2115 |
n/a |
__setDiscardedGenes |
|
957
|
38 |
n/a |
__totalNumAnnotatedGenes |
|
969
|
0 |
n/a |
__numAnnotatedNodesInBackground |
|
981
|
0 |
n/a |
__allGoIdsForBackground |
|
1002
|
8464 |
Yes |
genesDatabaseIds |
|
1012
|
554230 |
n/a |
__origNameForDatabaseId |
|
1021
|
2125 |
n/a |
__pValues |
|
1032
|
4245 |
n/a |
__correctionMethod |
|
1042
|
2115 |
n/a |
__shouldCalculateFDR |
|
1066
|
2118 |
n/a |
__determineDatabaseIdsFromGenes |
|
1226
|
2119 |
n/a |
__buildHashRefOfAnnotations |
|
1320
|
112674 |
n/a |
__allGOIDsForDatabaseId |
|
1390
|
2115 |
n/a |
__calculatePValues |
|
1446
|
105137 |
n/a |
__processOneGOID |
|
1503
|
452347 |
n/a |
__numAnnotationsToGoId |
|
1515
|
105137 |
n/a |
__totalNumAnnotationsToGoId |
|
1533
|
107295 |
Yes |
totalNumGenes |
|
1543
|
2115 |
n/a |
__allGoIdsForList |
|
1554
|
14 |
n/a |
__correctPvalues |
|
1569
|
12 |
n/a |
__correctPvaluesBybonferroni |
|
1608
|
2 |
n/a |
__correctPvaluesBysimulation |
|
1720
|
4 |
n/a |
__saveVariables |
|
1743
|
4 |
n/a |
__restoreVariables |
|
1759
|
4 |
n/a |
__samplingPopulation |
|
1823
|
2100 |
n/a |
__runOneSimulation |
|
1851
|
2100 |
n/a |
__listOfRandomGenes |
|
1894
|
2 |
n/a |
__calculateFDR |
|
2034
|
2115 |
n/a |
__addAnnotationsToPValues |
|
2078
|
125691 |
n/a |
__annotationProvider |
|
2088
|
289586 |
n/a |
__ontologyProvider |
|
2107
|
19429 |
Yes |
aspect |