| line |
true |
false |
branch |
|
116
|
0 |
1 |
unless (defined $gff_file) |
|
173
|
2 |
0 |
if (defined $$candi1{'gene'}) |
|
178
|
2 |
0 |
if (defined $$candi2{'gene'}) |
|
184
|
1 |
0 |
if ($gene_id eq $_) |
|
189
|
1 |
0 |
if $found_same_gene == 1 |
|
212
|
1 |
0 |
unless defined $prioritySub |
|
218
|
1 |
1 |
if ($priority != -1) |
|
219
|
1 |
0 |
if (not defined $best_priority or $priority < $best_priority) |
|
263
|
8 |
12 |
if (scalar @parents == 0) |
|
290
|
1 |
1 |
if (defined $mRNA) |
|
291
|
1 |
0 |
if ($mRNA->attribute('type') =~ /protein_coding/i) { } |
|
292
|
1 |
0 |
if (defined $exon) |
|
293
|
1 |
0 |
if ($exon->start > $pos_start or $exon->end < $pos_end) { } |
|
295
|
0 |
1 |
if (defined $$candidate{'three'}) { } |
|
|
0 |
1 |
elsif (defined $$candidate{'five'}) { } |
|
|
1 |
0 |
elsif (defined $$candidate{'cds'}) { } |
|
310
|
0 |
0 |
if (defined $exon) |
|
311
|
0 |
0 |
if ($exon->start > $pos_start or $exon->end < $pos_end) |
|
363
|
12 |
48 |
if ($parent eq $annot_id) |