| line |
true |
false |
branch |
|
26
|
0 |
1 |
unless defined $file |
|
31
|
0 |
1 |
if defined $args{'header_skip'} |
|
33
|
1 |
0 |
unless (defined $get_interval_sub) |
|
35
|
0 |
1 |
unless defined $type |
|
36
|
1 |
0 |
if ($type =~ /gff/i) { } |
|
|
0 |
0 |
elsif ($type =~ /sam/i) { } |
|
|
0 |
0 |
elsif ($type =~ /bed/i) { } |
|
62
|
0 |
0 |
unless defined $_->{'strand'} |
|
86
|
0 |
1 |
unless open my $fh, $self->{'file'} |
|
94
|
1 |
8 |
if ($header_line) |
|
95
|
0 |
1 |
if ($_ =~ /^$self->{'header_skip'}/) { } |
|
106
|
9 |
0 |
if (defined $i->{'low'} and defined $i->{'high'} and defined $i->{'seqname'}) |
|
109
|
0 |
9 |
unless defined $i->{'strand'} |
|
140
|
0 |
1 |
if ($fields[1] & 16) |
|
150
|
1 |
2 |
if ($op eq 'N' or $op eq 'D') { } |
|
|
2 |
0 |
elsif ($op ne 'S' or $op ne 'H' or $op ne 'I') { } |
|
176
|
1 |
1 |
if (@fields < 12) { } |