Subroutine Coverage
| blib/lib/CracTools/Utils.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
24 |
37 |
64.8
|
| pod |
24 |
24 |
100.0
|
| line |
count |
pod |
subroutine |
|
7
|
10 |
n/a |
BEGIN |
|
8
|
10 |
n/a |
BEGIN |
|
10
|
10 |
n/a |
BEGIN |
|
11
|
10 |
n/a |
BEGIN |
|
15
|
1 |
Yes |
reverseComplement |
|
27
|
1 |
Yes |
reverse_tab |
|
42
|
0 |
Yes |
isVersionGreaterOrEqual |
|
62
|
53 |
Yes |
convertStrand |
|
67
|
0 |
Yes |
removeChrPrefix |
|
73
|
0 |
Yes |
addChrPrefix |
|
79
|
5 |
Yes |
seqFileIterator |
|
106
|
7 |
n/a |
__ANON__ |
|
125
|
7 |
n/a |
__ANON__ |
|
146
|
1 |
Yes |
pairedEndSeqFileIterator |
|
152
|
2 |
n/a |
__ANON__ |
|
164
|
0 |
Yes |
writeSeq |
|
176
|
1 |
Yes |
bedFileIterator |
|
181
|
1 |
Yes |
gffFileIterator |
|
188
|
1 |
Yes |
vcfFileIterator |
|
194
|
0 |
Yes |
chimCTFileIterator |
|
199
|
0 |
Yes |
bamFileIterator |
|
210
|
0 |
n/a |
__ANON__ |
|
217
|
0 |
Yes |
getSeqFromIndexedRef |
|
237
|
1 |
Yes |
parseBedLine |
|
275
|
1 |
Yes |
parseGFFLine |
|
279
|
4 |
n/a |
__ANON__ |
|
281
|
0 |
n/a |
__ANON__ |
|
306
|
1 |
Yes |
parseVCFLine |
|
329
|
0 |
Yes |
parseChimCTLine |
|
365
|
1 |
Yes |
parseSAMLineLite |
|
388
|
5 |
Yes |
getFileIterator |
|
402
|
1 |
n/a |
__ANON__ |
|
423
|
0 |
n/a |
__ANON__ |
|
452
|
39 |
n/a |
__ANON__ |
|
469
|
11 |
Yes |
getReadingFileHandle |
|
481
|
0 |
Yes |
getWritingFileHandle |
|
493
|
0 |
Yes |
getLineFromSeekPos |