| line |
count |
pod |
subroutine |
|
8
|
1 |
n/a |
BEGIN |
|
10
|
1 |
n/a |
BEGIN |
|
11
|
1 |
n/a |
BEGIN |
|
13
|
1 |
n/a |
BEGIN |
|
14
|
1 |
n/a |
BEGIN |
|
15
|
1 |
n/a |
BEGIN |
|
16
|
1 |
n/a |
BEGIN |
|
17
|
1 |
n/a |
BEGIN |
|
18
|
1 |
n/a |
BEGIN |
|
20
|
1 |
n/a |
BEGIN |
|
21
|
1 |
n/a |
BEGIN |
|
23
|
0 |
Yes |
usage_desc |
|
27
|
0 |
Yes |
opt_spec |
|
38
|
0 |
Yes |
validate_args |
|
47
|
0 |
Yes |
execute |
|
88
|
0 |
n/a |
__ANON__ |
|
198
|
0 |
Yes |
extractSplicesFromSAMline |
|
263
|
0 |
Yes |
printSplices |
|
283
|
0 |
Yes |
extractMutationsFromSAMline |
|
403
|
0 |
Yes |
printMutations |
|
419
|
0 |
Yes |
addMutation |
|
476
|
0 |
Yes |
countReadCoverFromRegion |
|
490
|
0 |
Yes |
getSeqOrNs |
|
509
|
0 |
Yes |
extractChimerasFromSAMline |
|
538
|
0 |
Yes |
printChimeras |