Subroutine Coverage
| blib/lib/Bio/Tools/Run/TribeMCL.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
15 |
30 |
50.0
|
| pod |
4 |
5 |
80.0
|
| line |
count |
pod |
subroutine |
|
162
|
1 |
n/a |
BEGIN |
|
163
|
1 |
n/a |
BEGIN |
|
165
|
1 |
n/a |
BEGIN |
|
166
|
1 |
n/a |
BEGIN |
|
167
|
1 |
n/a |
BEGIN |
|
168
|
1 |
n/a |
BEGIN |
|
169
|
1 |
n/a |
BEGIN |
|
170
|
1 |
n/a |
BEGIN |
|
171
|
1 |
n/a |
BEGIN |
|
172
|
1 |
n/a |
BEGIN |
|
173
|
1 |
n/a |
BEGIN |
|
205
|
1 |
n/a |
BEGIN |
|
228
|
1 |
Yes |
new |
|
252
|
5 |
n/a |
AUTOLOAD |
|
272
|
0 |
Yes |
mcl_executable |
|
307
|
1 |
Yes |
matrix_executable |
|
342
|
0 |
Yes |
run |
|
369
|
0 |
n/a |
_generate_families |
|
435
|
0 |
n/a |
_consensifier |
|
579
|
0 |
n/a |
_setup_description |
|
601
|
0 |
No |
as_words |
|
608
|
0 |
n/a |
_apply_edits |
|
640
|
0 |
n/a |
_run_mcl |
|
686
|
0 |
n/a |
_run_matrix |
|
729
|
0 |
n/a |
_setup_input |
|
786
|
0 |
n/a |
_get_from_hsp |
|
809
|
0 |
n/a |
_get_from_hit |
|
839
|
0 |
n/a |
_get_from_searchio |
|
879
|
0 |
n/a |
_parse_blastfile |
|
923
|
0 |
n/a |
_parse_mcl |