Subroutine Coverage
| blib/lib/Bio/Tools/Run/Phylo/Phyml.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
16 |
36 |
44.4
|
| pod |
26 |
26 |
100.0
|
| line |
count |
pod |
subroutine |
|
152
|
1 |
n/a |
BEGIN |
|
154
|
1 |
n/a |
BEGIN |
|
155
|
1 |
n/a |
BEGIN |
|
156
|
1 |
n/a |
BEGIN |
|
157
|
1 |
n/a |
BEGIN |
|
159
|
1 |
n/a |
BEGIN |
|
206
|
1 |
Yes |
new |
|
287
|
7 |
Yes |
program_name |
|
311
|
4 |
Yes |
program_dir |
|
332
|
0 |
Yes |
version |
|
362
|
0 |
Yes |
run |
|
392
|
0 |
Yes |
stats |
|
408
|
0 |
Yes |
tree_string |
|
428
|
0 |
Yes |
data_type |
|
466
|
3 |
Yes |
data_format |
|
487
|
2 |
Yes |
dataset_count |
|
518
|
0 |
Yes |
model |
|
568
|
2 |
Yes |
kappa |
|
591
|
2 |
Yes |
invar |
|
614
|
2 |
Yes |
category_number |
|
634
|
3 |
Yes |
alpha |
|
657
|
3 |
Yes |
tree |
|
683
|
0 |
Yes |
opt_topology |
|
711
|
0 |
Yes |
opt_lengths |
|
743
|
0 |
Yes |
freq |
|
769
|
0 |
Yes |
opt |
|
791
|
0 |
Yes |
search |
|
813
|
0 |
Yes |
rand_start |
|
840
|
0 |
Yes |
rand_starts |
|
866
|
0 |
Yes |
rand_seed |
|
888
|
0 |
Yes |
no_memory_check |
|
913
|
0 |
n/a |
bootstrap |
|
934
|
0 |
Yes |
command |
|
953
|
0 |
n/a |
_run |
|
1015
|
0 |
n/a |
_setparams |
|
1093
|
0 |
n/a |
_write_phylip_align_file |