| blib/lib/Bio/Tools/Run/Alignment/Muscle.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 2 | 19 | 10.5 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 495 | 0 | 0 | 0 | ref $seq and $seq->isa('Bio::PrimarySeqI') |
| line | l | !l | condition |
|---|---|---|---|
| 154 | 1 | 0 | $out || '' |
| 230 | 0 | 0 | $1 || undef |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 157 | 0 | 0 | 1 | $self->clw or $self->clwstrict |
| 432 | 0 | 0 | 0 | not -e $outfile or -z $outfile |
| 497 | 0 | 0 | 0 | not defined $seq->display_id or $seq->display_id =~ /^\s+$/ |
| 564 | 0 | 0 | 0 | $self->quiet or $self->verbose < 0 |