| blib/lib/Bio/Tools/Run/Alignment/Exonerate.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| branch | 4 | 26 | 15.3 |
| line | true | false | branch |
|---|---|---|---|
| 133 | 0 | 3 | if $ENV{'EXONERATEDIR'} |
| 140 | 0 | 0 | unless $Bio::Tools::Run::Alignment::Exonerate::OK_FIELD{$attr} |
| 141 | 0 | 0 | if @_ |
| 163 | 1 | 1 | if $attr =~ /^-/ |
| 164 | 0 | 1 | if ($attr =~ /PROGRAM/i) |
| 187 | 0 | 0 | unless $exe = $self->executable |
| 227 | 0 | 0 | if defined $infile1 |
| 249 | 0 | 0 | unless $status == 0 |
| 274 | 0 | 0 | if (ref($query) =~ /ARRAY/i) { } |
| 0 | 0 | elsif ($query->isa('Bio::PrimarySeqI')) { } | |
| 280 | 0 | 0 | unless ($seq1->isa('Bio::PrimarySeqI')) |
| 314 | 0 | 0 | if $attr =~ /PROGRAM/ |
| 316 | 0 | 0 | unless defined $value |