Subroutine Coverage
| blib/lib/Bio/Tools/Run/Alignment/Blat.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
14 |
31 |
45.1
|
| pod |
17 |
17 |
100.0
|
| line |
count |
pod |
subroutine |
|
90
|
1 |
n/a |
BEGIN |
|
91
|
1 |
n/a |
BEGIN |
|
92
|
1 |
n/a |
BEGIN |
|
94
|
1 |
n/a |
BEGIN |
|
95
|
1 |
n/a |
BEGIN |
|
96
|
1 |
n/a |
BEGIN |
|
97
|
1 |
n/a |
BEGIN |
|
98
|
1 |
n/a |
BEGIN |
|
140
|
2 |
Yes |
new |
|
159
|
6 |
Yes |
program_name |
|
174
|
3 |
Yes |
program_dir |
|
189
|
0 |
Yes |
run |
|
209
|
0 |
Yes |
align |
|
224
|
2 |
Yes |
db |
|
253
|
1 |
Yes |
qsegment |
|
277
|
0 |
Yes |
tsegment |
|
295
|
0 |
Yes |
outfile_name |
|
317
|
0 |
Yes |
searchio |
|
343
|
2 |
Yes |
set_parameters |
|
377
|
0 |
Yes |
reset_parameters |
|
397
|
0 |
Yes |
validate_parameters |
|
411
|
0 |
Yes |
parameters_changed |
|
426
|
0 |
Yes |
available_parameters |
|
443
|
0 |
Yes |
get_parameters |
|
470
|
0 |
Yes |
to_exe_string |
|
527
|
0 |
n/a |
_input |
|
546
|
0 |
n/a |
_database |
|
563
|
0 |
n/a |
_run |
|
602
|
0 |
n/a |
_writeSeqFile |
|
612
|
0 |
n/a |
_tempfile |
|
621
|
0 |
n/a |
_quiet |