| line |
true |
false |
branch |
|
98
|
0 |
1 |
if $ENV{'WISEDIR'} |
|
149
|
1 |
2 |
if $attr =~ /^-/ |
|
150
|
0 |
2 |
if ($attr =~ /'PROGRAM'/i) |
|
165
|
0 |
1 |
unless $Bio::Tools::Run::Pseudowise::OK_FIELD{$attr} |
|
166
|
1 |
0 |
if @_ |
|
184
|
0 |
0 |
unless $self->executable |
|
233
|
0 |
0 |
if (@files != 3 or grep {not defined $_;} @files) |
|
266
|
0 |
0 |
if ($self->silent or $self->quiet or $self->verbose < 1) |
|
267
|
0 |
0 |
$^O =~ /mswin/i ? : |
|
279
|
0 |
0 |
if ($self->verbose > 0) |
|
280
|
0 |
0 |
unless open $tfh1, $outfile |
|
301
|
0 |
0 |
unless $outfile |
|
303
|
0 |
0 |
if (not ref($outfile) =~ /GLOB/i) { } |
|
304
|
0 |
0 |
unless open $filehandle, '<' . $outfile |
|
335
|
0 |
0 |
unless ($seq1->isa('Bio::PrimarySeqI') and $seq2->isa('Bio::PrimarySeqI') and $seq2->isa('Bio::PrimarySeqI')) |
|
368
|
0 |
0 |
unless defined $value |
|
375
|
0 |
0 |
unless defined $value |
|
398
|
0 |
0 |
if (defined $seq) |
|
417
|
0 |
0 |
if (defined $seq) |
|
437
|
0 |
0 |
if (defined $seq) |