Branch Coverage

blib/lib/Bio/Tools/Run/Primer3.pm

Criterion	Covered	Total	%
branch	12	96	12.5

line	true	false	branch
226	0	0	unless $Bio::Tools::Run::Primer3::OK_FIELD{$attr}
227	0	0	if @_
261	0	1	if defined $args{'-program'}
263	0	1	if ($args{'-verbose'})
264	1	0	if ($args{'-seq'})
271	0	1	if ($args{'-outfile'})
272	0	1	if ($args{'-path'})
277	0	0	if ($^O =~ /mswin/i)
301	0	6	if @_
302	0	6	if $self->{'program_name'}
304	0	12	if ($self->io->exists_exe($_))
325	0	5	if ($dir)
331	4	1	if $self->{'program_dir'}
333	0	1	if ($ENV{'PRIMER3'}) { }
363	0	0	if (uc $key eq '-SEQ' or uc $key eq '-SEQUENCE')
366	0	0	if (defined $inputarray->[0])
372	0	0	unless ($self->{'no_param_checks'})
373	0	0	unless ($Bio::Tools::Run::Primer3::OK_FIELD{$key})
378	0	0	if (uc $key eq 'INCLUDED_REGION') { }
	0	0	elsif (uc $key eq 'PRIMER_MIN_SIZE') { }
	0	0	elsif ($key eq 'PRIMER_MAX_SIZE') { }
	0	0	elsif (uc $key eq 'SEQUENCE') { }
384	0	0	if ($input =~ /SEQUENCE=(.*)/)
387	0	0	if (not $args{$key}) { }
	0	0	elsif (not $args{$key} =~ /\,/) { }
395	0	0	if (exists $args{'PRIMER_MAX_SIZE'})
396	0	0	unless ($args{'PRIMER_MAX_SIZE'} > $args{'PRIMER_MIN_SIZE'})
400	0	0	if ($args{$key} < 0)
405	0	0	if ($args{$key} > 35)
409	0	0	unless defined $self->{'seqobject'}
420	0	0	if (uc $array_key eq uc $key) { }
423	0	0	unless ($replaced)
426	0	0	if ($self->{'verbose'})
450	0	0	unless ($executable and -e $executable)
451	0	0	unless $executable
460	0	0	if ($self->{'verbose'})
469	0	0	if ($executable =~ /^[^\'\"]+(.+)[^\'\"]+$/)
473	0	0	unless open RESULTS, $executable_command
474	0	0	if ($self->{'_outfilename'})
482	0	0	unless open OUT, '>' . $self->{'_outfilename'}
487	0	0	if ($self->{'_outfilename'})
493	0	0	if $_ eq '='
500	0	0	if ($self->{'_outfilename'})
537	0	0	unless ($self->{'input_options'})
538	0	0	if ($required) { }
555	0	0	unless my $exe = $self->executable
556	0	0	unless (defined $self->{'_progversion'})
559	0	0	if ($string =~ /primer3\s+release\s+([\d\.]+)/)