| line |
true |
false |
branch |
|
246
|
0 |
3 |
if $ENV{'PHYLIPDIR'} |
|
257
|
1 |
3 |
if $attr =~ /^-/ |
|
258
|
0 |
3 |
if ($attr =~ /PROGRAM/i) |
|
262
|
1 |
2 |
if ($attr =~ /IDLENGTH/i) |
|
276
|
0 |
2 |
unless $Bio::Tools::Run::Phylo::Phylip::SeqBoot::OK_FIELD{$attr} |
|
277
|
2 |
0 |
if @_ |
|
294
|
1 |
0 |
if (@_) |
|
334
|
0 |
0 |
unless ($infilename) |
|
362
|
0 |
0 |
unless ('File::Spec'->file_name_is_absolute($infile)) |
|
367
|
0 |
0 |
if ($self->version == 3.5) { } |
|
377
|
0 |
0 |
if ($self->quiet or $self->verbose < 0) { } |
|
378
|
0 |
0 |
$^O =~ /mswin/i ? : |
|
390
|
0 |
0 |
unless -e $outfile |
|
397
|
0 |
0 |
if $self->version == 3.6 |
|
405
|
0 |
0 |
unless $self->save_tempfiles |
|
428
|
0 |
0 |
unless (ref $input) |
|
431
|
0 |
0 |
unless (-e $input) |
|
434
|
0 |
0 |
ref $input eq 'ARRAY' ? : |
|
442
|
0 |
0 |
unless $input->isa('Bio::Align::AlignI') |
|
474
|
0 |
0 |
unless defined $value |
|
475
|
0 |
0 |
if ($attr =~ /REPLICATES/i) { } |
|
|
0 |
0 |
elsif ($attr =~ /DATATYPE/i) { } |
|
476
|
0 |
0 |
unless ($value =~ /(\d+(\.\d+)?)/) |
|
483
|
0 |
0 |
if $value =~ /GENEFREQ/i |
|
487
|
0 |
0 |
if ($attr =~ /ALLELES/i) |
|
488
|
0 |
0 |
unless ($gene_freq) |