| line |
true |
false |
branch |
|
247
|
0 |
1 |
if (defined $ENV{'PHYLIPDIR'}) { } |
|
249
|
0 |
0 |
$^O =~ /mswin/i ? : |
|
287
|
0 |
3 |
if $ENV{'PHYLIPDIR'} |
|
298
|
0 |
5 |
if $attr =~ /^-/ |
|
299
|
0 |
5 |
if ($attr =~ /IDLENGTH/i) |
|
305
|
1 |
0 |
unless (defined $self->idlength) |
|
316
|
0 |
5 |
unless $Bio::Tools::Run::Phylo::Phylip::Neighbor::OK_FIELD{$attr} |
|
317
|
5 |
0 |
if @_ |
|
334
|
1 |
1 |
if (@_) |
|
373
|
0 |
0 |
unless ($infilename) |
|
380
|
0 |
0 |
wantarray ? : |
|
418
|
0 |
0 |
unless ('File::Spec'->file_name_is_absolute($infile)) |
|
425
|
0 |
0 |
if ($self->quiet or $self->verbose < 0) { } |
|
426
|
0 |
0 |
$^O =~ /mswin/i ? : |
|
439
|
0 |
0 |
unless -e $treefile |
|
447
|
0 |
0 |
unless ($self->save_tempfiles) |
|
474
|
0 |
0 |
unless (ref $input) |
|
477
|
0 |
0 |
unless (-e $input) |
|
481
|
0 |
0 |
ref $input eq 'ARRAY' ? : |
|
485
|
0 |
0 |
if ($input->isa('Bio::Matrix::PhylipDist')) |
|
507
|
0 |
0 |
if ($val) |
|
526
|
0 |
0 |
if ($name) |
|
555
|
0 |
0 |
unless defined $value and $value |
|
556
|
0 |
0 |
if ($attr =~ /TYPE/i) { } |
|
|
0 |
0 |
elsif ($attr =~ /OUTGROUP/i) { } |
|
|
0 |
0 |
elsif ($attr =~ /JUMBLE/i) { } |
|
|
0 |
0 |
elsif ($attr =~ /MULTIPLE/i) { } |
|
557
|
0 |
0 |
if ($value =~ /UPGMA/i) |
|
563
|
0 |
0 |
if ($type ne 'UPGMA') { } |
|
564
|
0 |
0 |
unless ($value =~ /^\d+$/) |
|
566
|
0 |
0 |
unless $names{$value} |
|
576
|
0 |
0 |
unless $value =~ /\d+/ and $value % 2 == 1 |
|
582
|
0 |
0 |
if ($version eq '3.6') |
|
590
|
0 |
0 |
if (not $param_string =~ /$menu{'MULTIPLE'}/ and (defined $self->_input_nbr and $self->_input_nbr > 1)) |