| line |
true |
false |
branch |
|
267
|
0 |
3 |
if $ENV{'PHYLIPDIR'} |
|
279
|
1 |
0 |
if $attr =~ /^-/ |
|
280
|
0 |
0 |
if ($attr =~ /PROGRAM/i) |
|
284
|
0 |
0 |
if ($attr =~ /IDLENGTH/i) |
|
298
|
0 |
0 |
unless $Bio::Tools::Run::Phylo::Phylip::Consense::OK_FIELD{$attr} |
|
299
|
0 |
0 |
if @_ |
|
316
|
0 |
0 |
if (@_) |
|
355
|
0 |
0 |
unless ($infilename) |
|
384
|
0 |
0 |
unless ('File::Spec'->file_name_is_absolute($infile)) |
|
390
|
0 |
0 |
if ($self->quiet or $self->verbose < 0) { } |
|
391
|
0 |
0 |
$^O =~ /mswin/i ? : |
|
406
|
0 |
0 |
unless -e $outfile |
|
416
|
0 |
0 |
unless $self->save_tempfiles |
|
455
|
0 |
0 |
unless (ref $input) |
|
458
|
0 |
0 |
unless (-e $input) |
|
466
|
0 |
0 |
ref $input eq 'ARRAY' ? : |
|
472
|
0 |
0 |
unless $tree->isa('Bio::Tree::TreeI') |
|
497
|
0 |
0 |
if ($name) |
|
529
|
0 |
0 |
unless defined $value |
|
530
|
0 |
0 |
if ($attr =~ /ROOTED/i) { } |
|
|
0 |
0 |
elsif ($attr =~ /OUTGROUP/i) { } |
|
|
0 |
0 |
elsif ($attr =~ /TYPE/i) { } |
|
535
|
0 |
0 |
if ($rooted == 1) |
|
539
|
0 |
0 |
unless ($value =~ /^\d+$/) |
|
541
|
0 |
0 |
unless $names{$value} |
|
547
|
0 |
0 |
if ($value =~ /Ml/i) |
|
551
|
0 |
0 |
if ($frac <= 0.5 or $frac > 1) |
|
564
|
0 |
0 |
if ($Ml) |