| line |
true |
false |
branch |
|
228
|
0 |
0 |
if $attr =~ /^-/ |
|
239
|
0 |
5 |
unless $Bio::Tools::Run::Phylo::LVB::OK_FIELD{$attr} |
|
240
|
5 |
0 |
if @_ |
|
268
|
0 |
0 |
unless ($infilename) |
|
315
|
0 |
0 |
unless $self->executable |
|
319
|
0 |
0 |
unless ('File::Spec'->file_name_is_absolute($infile)) |
|
332
|
0 |
0 |
unless print LVB_SUB_RUN_TMP_OUT_FH $_ |
|
337
|
0 |
0 |
if ($self->quiet or $self->verbose < 0) { } |
|
338
|
0 |
0 |
$^O =~ /mswin/i ? : |
|
350
|
0 |
0 |
unless -e $treefile |
|
360
|
0 |
0 |
unless ($self->save_tempfiles) |
|
388
|
0 |
0 |
unless (ref $input) |
|
391
|
0 |
0 |
unless (-e $input) |
|
396
|
0 |
0 |
if ($input->isa('Bio::Align::AlignI')) |
|
404
|
0 |
0 |
unless ($self->format =~ /^interleaved$/i) |
|
432
|
0 |
0 |
if ($attr =~ /SEED/i) { } |
|
|
0 |
0 |
elsif ($attr =~ /BOOTSTRAPS/i) { } |
|
433
|
0 |
0 |
unless defined $value |
|
436
|
0 |
0 |
unless defined $value |