| line |
true |
false |
branch |
|
122
|
0 |
0 |
if defined $aln |
|
123
|
0 |
0 |
if defined $tree |
|
124
|
0 |
0 |
if defined $st |
|
125
|
0 |
0 |
if defined $exe |
|
128
|
0 |
0 |
if (defined $params) |
|
129
|
0 |
0 |
if (not ref($params) =~ /HASH/i) { } |
|
150
|
0 |
0 |
unless (defined $self->{'_params'}{'order'}) |
|
156
|
0 |
0 |
if (ref($item) =~ /Bio::SimpleAlign/) { } |
|
|
0 |
0 |
elsif (ref($item) =~ /Bio::Tree::Tree/) { } |
|
181
|
0 |
0 |
unless open OUTFILE, '>', $outfile |
|
202
|
0 |
0 |
unless (defined $batchfile) |
|
206
|
0 |
0 |
unless (-f $batchfile) |
|
210
|
0 |
0 |
if (-f $new_bf) { } |
|
235
|
0 |
0 |
if ($param =~ /\d+/) { } |
|
255
|
0 |
0 |
if (defined $bf) |
|
259
|
0 |
0 |
if ($self->{'_params'}{'bf'}) { } |
|
280
|
0 |
0 |
unless open BF, '>', $temp_bf |
|
302
|
0 |
0 |
unless (defined $keepold) |
|
311
|
0 |
0 |
if (ref($val) =~ /ARRAY/i) { } |