| line |
true |
false |
branch |
|
158
|
0 |
3 |
if $ENV{'SIM4DIR'} |
|
172
|
0 |
6 |
if ($attr =~ /est_first/i) |
|
176
|
0 |
6 |
if $attr =~ /^-/ |
|
177
|
0 |
6 |
if ($attr =~ /'PROGRAM'/i) |
|
191
|
0 |
7 |
unless $Bio::Tools::Run::Alignment::Sim4::OK_FIELD{$attr} |
|
192
|
7 |
0 |
if @_ |
|
243
|
0 |
0 |
if $cdna |
|
244
|
0 |
0 |
unless $self->cdna_seq |
|
246
|
0 |
0 |
if $genomic |
|
247
|
0 |
0 |
unless $self->genomic_seq |
|
254
|
0 |
0 |
unless ($infile1 and $infile2) |
|
283
|
0 |
0 |
unless ($self->outfile) |
|
291
|
0 |
0 |
if ($self->quiet or $self->silent or $self->verbose < 0) |
|
292
|
0 |
0 |
$^O =~ /mswin/i ? : |
|
297
|
0 |
0 |
unless $status == 0 |
|
323
|
0 |
0 |
defined $self->{'est_first'} ? : |
|
326
|
0 |
0 |
if (ref $cdna) { } |
|
327
|
0 |
0 |
ref $cdna eq 'ARRAY' ? : |
|
337
|
0 |
0 |
if ($#cdna > 0) |
|
347
|
0 |
0 |
$count > 1 ? : |
|
350
|
0 |
0 |
if (ref $genomic) { } |
|
360
|
0 |
0 |
if $estfirst |
|
385
|
0 |
0 |
unless defined $value |