| line |
true |
false |
branch |
|
196
|
0 |
3 |
if $ENV{'PROBCONSDIR'} |
|
221
|
0 |
0 |
if $attr =~ /^-/ |
|
223
|
0 |
0 |
if ($attr =~ /verbose/i) |
|
236
|
0 |
0 |
unless $Bio::Tools::Run::Alignment::Probcons::OK_FIELD{$attr} |
|
238
|
0 |
0 |
if @_ |
|
255
|
0 |
0 |
if (defined $value) |
|
276
|
0 |
0 |
unless $exe = $self->executable |
|
328
|
0 |
0 |
unless ($infilename) |
|
359
|
0 |
0 |
if ($status) |
|
365
|
0 |
0 |
if (-e $outfile or -z $outfile) |
|
390
|
0 |
0 |
if (not ref $input) { } |
|
|
0 |
0 |
elsif (ref($input) =~ /ARRAY/i) { } |
|
393
|
0 |
0 |
unless (-e $input) |
|
395
|
0 |
0 |
unless open IN, $infilename |
|
398
|
0 |
0 |
unless $header =~ /^\s+$/ |
|
401
|
0 |
0 |
unless ($header =~ /^>\s*\S+/) |
|
409
|
0 |
0 |
if (not ref $input->[0]) { } |
|
|
0 |
0 |
elsif ($input->[0]->isa('Bio::PrimarySeqI')) { } |
|
417
|
0 |
0 |
unless ref $seq and $seq->isa('Bio::PrimarySeqI') |
|
419
|
0 |
0 |
if (not defined $seq->display_id or $seq->display_id =~ /^\s+$/) |
|
461
|
0 |
0 |
unless defined $value |
|
463
|
0 |
0 |
unless $attr eq 'ANNOT' |
|
464
|
0 |
0 |
if $attr eq 'ANNOT' |
|
468
|
0 |
0 |
if ($self->{'verbose_set'}) |
|
473
|
0 |
0 |
unless $value |
|
479
|
0 |
0 |
unless ($self->outfile_name) |
|
488
|
0 |
0 |
if ($self->verbose < 0) |
|
489
|
0 |
0 |
$^O =~ /mswin/i ? : |
|
508
|
1 |
0 |
if @_ |