| blib/lib/Bio/Tools/Run/Alignment/MAFFT.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 4 | 26 | 15.3 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 156 | 2 | 0 | 0 | defined $exe and -x $exe |
| 161 | 2 | 0 | 0 | -e $f and -x $f |
| 167 | 2 | 0 | 0 | $exe = $self->io->exists_exe($exename) and -x $exe |
| 430 | 0 | 0 | 0 | ref $seq and $seq->isa('Bio::PrimarySeqI') |
| 517 | 0 | 0 | 0 | not $method =~ /(rough|nsi)$/ and defined $self->cycles |
| line | l | !l | condition |
|---|---|---|---|
| 564 | 0 | 1 | $self->version || '' |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 386 | 0 | 0 | 0 | not -e $outfile or -z $outfile |
| 432 | 0 | 0 | 0 | not defined $seq->display_id or $seq->display_id =~ /^\s+$/ |
| 525 | 0 | 0 | 0 | $self->quiet or $self->verbose < 0 |