| blib/lib/Bio/Tools/Run/Alignment/Lagan.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 4 | 35 | 11.4 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 219 | 0 | 0 | 0 | $tree and ref $tree |
| 0 | 0 | 0 | $tree and ref $tree and $tree->isa('Bio::Tree::TreeI') | |
| 284 | 0 | 0 | 0 | ref $thing and $thing->isa('Bio::Matrix::Mlagan') |
| 483 | 0 | 0 | 0 | $version <= 3 and $matrix_file |
| 492 | 0 | 0 | 0 | $self->silent || $self->quiet and not $^O =~ /os2|dos|MSWin32|amigaos/ |
| 513 | 0 | 0 | 0 | $version <= 1 and $self->{'_nucmatrixfile'} |
| 551 | 1 | 0 | 0 | defined $exe and -x $exe |
| 556 | 1 | 0 | 0 | -e $f and -x $f |
| 559 | 1 | 0 | 0 | $exe = $self->io->exists_exe($exename) and -x $exe |
| line | l | !l | condition |
|---|---|---|---|
| 627 | 0 | 0 | $self->executable('mlagan') || (return) |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 173 | 0 | 1 | 0 | $self->out || $self->outfile || $tempfile |
| 492 | 0 | 0 | 0 | $self->silent || $self->quiet |