| line |
true |
false |
branch |
|
174
|
0 |
3 |
if $ENV{'BLATDIR'} |
|
190
|
0 |
0 |
if (ref $query) |
|
191
|
0 |
0 |
if (ref($query) =~ /GLOB/) |
|
225
|
2 |
0 |
if @_ |
|
254
|
1 |
0 |
if @_ |
|
278
|
0 |
0 |
if @_ |
|
296
|
0 |
0 |
if @_ |
|
318
|
0 |
0 |
if ($params and ref $params eq 'HASH') |
|
346
|
0 |
2 |
ref $_[0] eq 'ARRAY' ? : |
|
|
0 |
2 |
ref $_[0] eq 'HASH' ? : |
|
355
|
0 |
4 |
if (exists $BLAT_PARAMS{$key}) { } |
|
|
0 |
4 |
elsif (exists $BLAT_SWITCHES{$key}) { } |
|
|
3 |
2 |
elsif ($LOCAL_ATTRIBUTES{$key} and $self->can($key)) { } |
|
358
|
0 |
0 |
$BLAT_SWITCHES{$key} ? : |
|
379
|
0 |
0 |
if (@_) |
|
446
|
0 |
0 |
if (exists $self->{'parameters'}) { } |
|
472
|
0 |
0 |
unless defined $seq |
|
480
|
0 |
0 |
unless defined $exe |
|
482
|
0 |
0 |
if ($tseg) |
|
486
|
0 |
0 |
if ($qseg) |
|
493
|
0 |
0 |
if (exists $params{$p}) |
|
499
|
0 |
0 |
if (exists $params{$p}) |
|
528
|
0 |
0 |
if (defined $infile1) |
|
547
|
0 |
0 |
if defined $infile1 |
|
569
|
0 |
0 |
if $self->verbose > 0 |
|
574
|
0 |
0 |
unless $status == 0 |
|
577
|
0 |
0 |
exists $params{'out'} ? : |
|
579
|
0 |
0 |
!(ref($out) =~ /GLOB/) ? : |
|
585
|
0 |
0 |
$params{'prot'} ? : |
|
|
0 |
0 |
$params{'prot'} ? : |
|
624
|
0 |
0 |
if ($self->quiet) |
|
625
|
0 |
0 |
$^O =~ /Win/i ? : |