| line |
true |
false |
branch |
|
112
|
0 |
1 |
defined $genetag ? : |
|
113
|
0 |
1 |
defined $srctag ? : |
|
114
|
0 |
1 |
defined $exontag ? : |
|
133
|
1 |
288 |
if @_ |
|
152
|
1 |
288 |
if @_ |
|
171
|
1 |
288 |
if @_ |
|
190
|
0 |
0 |
if ($method and not $method =~ /tRNAscan-SE/i) |
|
248
|
287 |
11 |
if (/^(\S+)\s+ # sequence name
(\d+)\s+ # tRNA #
(\d+)\s+(\d+)\s+ # tRNA start,end
(\w{3})\s+ # tRNA type
([CAGT]{3})\s+ # Codon
(\d+)\s+(\d+)\s+ # Intron Begin End
(\d+\.\d+)/ox) |
|
262
|
131 |
156 |
if ($start > $end) |
|
265
|
266 |
21 |
if ($self->{'_seen'}{$type}++) |
|
282
|
59 |
228 |
if ($intron_start) { } |
|
283
|
23 |
36 |
if ($intron_start > $intron_end) |