| Bio/Tools/Glimmer.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 23 | 38 | 60.5 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 169 | 5 | 0 | 0 | defined $format and $format eq 'Glimmer' || $format eq 'GlimmerM' || $format eq 'GlimmerHMM' |
| 205 | 0 | 0 | 0 | $method and not $method =~ /glimmer/i |
| 449 | 40 | 178 | 2 | defined $seqname and $_ =~ /^Sequence length = (\d+)$/ |
| 530 | 0 | 110 | 1 | defined $seqlength and $coord > $seqlength |
| 551 | 41 | 0 | 13 | $strand eq '-' and not $fst |
| 41 | 0 | 13 | $strand eq '-' and not $fst and not $fend | |
| 0 | 0 | 13 | $strand eq '-' and not $fst and not $fend and $start > $end | |
| 596 | 0 | 4 | 110 | exists $self->{'_preds'} and @{$self->{'_preds'};} |
| line | l | !l | condition |
|---|---|---|---|
| 563 | 31 | 25 | $score || undef |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 169 | 0 | 0 | 0 | $format eq 'Glimmer' || $format eq 'GlimmerM' || $format eq 'GlimmerHMM' |
| 345 | 6 | 60 | 238 | /^(Predicted genes)|(Gene)|\s+\#/ or /^\s+$/ |
| 370 | 2 | 52 | 184 | not $lastgenenum or $lastgenenum != $genenum |
| 462 | 25 | 31 | 0 | /^\s+(\d+)\s+ # gene num (\d+)\s+(\d+)\s+ # start, end \[([\+\-])(\d{1})\s+ # strand, frame /ox or /^[^\d]+(\d+)\s+ # orf (numeric portion) (\d+)\s+(\d+)\s+ # start, end ([\+\-])(\d{1})\s+ # strand, frame ([\d\.]+) # score /ox |