| line |
true |
false |
branch |
|
82
|
3 |
0 |
unless (grep {lc $_ eq '-is_coding';} @args) |
|
89
|
0 |
3 |
unless $primary or $prim |
|
107
|
3 |
3 |
if ($exon) |
|
109
|
0 |
3 |
unless $exon->isa('Bio::SeqFeature::Gene::ExonI') |
|
130
|
3 |
3 |
if ($exon) |
|
132
|
0 |
3 |
unless $exon->isa('Bio::SeqFeature::Gene::ExonI') |
|
174
|
0 |
0 |
unless defined $ss_start |
|
175
|
0 |
0 |
unless defined $ss_end |
|
176
|
0 |
0 |
if ($self->strand < 0) |
|
184
|
0 |
0 |
if ($self->strand < 0) { } |
|
185
|
0 |
0 |
$ss_start > $down_exon->length ? : |
|
186
|
0 |
0 |
$ss_end > $self->length - 2 ? : |
|
193
|
0 |
0 |
$ss_start > $self->length - 2 ? : |
|
194
|
0 |
0 |
$ss_end > $down_exon->length ? : |
|
227
|
0 |
0 |
unless defined $ss_start |
|
228
|
0 |
0 |
unless defined $ss_end |
|
229
|
0 |
0 |
if ($self->strand < 0) |
|
236
|
0 |
0 |
if ($self->strand < 0) { } |
|
237
|
0 |
0 |
$ss_end > $up_exon->length ? : |
|
238
|
0 |
0 |
$ss_start > $self->length - 2 ? : |
|
245
|
0 |
0 |
$ss_start > $up_exon->length ? : |
|
246
|
0 |
0 |
$ss_end > $self->length - 2 ? : |
|
259
|
3 |
6 |
unless ($self->{'_intron_location'}) |
|
268
|
0 |
3 |
unless (ref $up_seq eq ref $down_seq) |
|
275
|
0 |
3 |
unless ($up_strand == $down_strand) |
|
284
|
3 |
0 |
if ($up_strand == 1) { } |
|
291
|
0 |
3 |
unless ($exon_end < $exon_start) |