Subroutine Coverage
| Bio/Search/Hit/GenericHit.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
41 |
49 |
83.6
|
| pod |
46 |
46 |
100.0
|
| line |
count |
pod |
subroutine |
|
98
|
27 |
n/a |
BEGIN |
|
100
|
27 |
n/a |
BEGIN |
|
102
|
27 |
n/a |
BEGIN |
|
128
|
3595 |
Yes |
new |
|
205
|
3435 |
Yes |
add_hsp |
|
229
|
4261 |
Yes |
hsp_factory |
|
249
|
5117 |
Yes |
name |
|
269
|
2952 |
Yes |
accession |
|
289
|
3669 |
Yes |
description |
|
309
|
1138 |
Yes |
length |
|
334
|
4661 |
Yes |
algorithm |
|
356
|
1336 |
Yes |
raw_score |
|
385
|
14 |
Yes |
score |
|
401
|
3687 |
Yes |
significance |
|
431
|
1696 |
Yes |
bits |
|
459
|
347 |
Yes |
next_hsp |
|
495
|
3371 |
Yes |
hsps |
|
518
|
139 |
Yes |
num_hsps |
|
539
|
102 |
Yes |
rewind |
|
565
|
9 |
Yes |
ambiguous_aln |
|
577
|
10 |
Yes |
overlap |
|
606
|
0 |
Yes |
n |
|
654
|
3 |
Yes |
p |
|
695
|
48 |
Yes |
hsp |
|
741
|
32 |
Yes |
logical_length |
|
786
|
448 |
Yes |
length_aln |
|
849
|
116 |
Yes |
gaps |
|
887
|
124 |
Yes |
matches |
|
948
|
24 |
Yes |
start |
|
1025
|
24 |
Yes |
end |
|
1093
|
0 |
Yes |
range |
|
1150
|
41 |
Yes |
frac_identical |
|
1226
|
15 |
Yes |
frac_conserved |
|
1275
|
19 |
Yes |
frac_aligned_query |
|
1313
|
13 |
Yes |
frac_aligned_hit |
|
1369
|
0 |
Yes |
num_unaligned_hit |
|
1405
|
0 |
Yes |
num_unaligned_query |
|
1447
|
0 |
Yes |
seq_inds |
|
1478
|
20 |
Yes |
strand |
|
1540
|
10 |
Yes |
frame |
|
1579
|
3523 |
Yes |
rank |
|
1595
|
1 |
Yes |
locus |
|
1623
|
1 |
Yes |
each_accession_number |
|
1671
|
584 |
Yes |
tiled_hsps |
|
1688
|
3565 |
Yes |
query_length |
|
1712
|
10 |
Yes |
ncbi_gi |
|
1743
|
0 |
Yes |
sort_hsps |
|
1783
|
0 |
Yes |
iteration |
|
1818
|
0 |
Yes |
found_again |