| lib/Bio/Tradis/RunTradis.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| subroutine | 21 | 32 | 65.6 |
| pod | 0 | 1 | 0.0 |
| line | count | pod | subroutine |
|---|---|---|---|
| 6 | 2 | n/a | BEGIN |
| 7 | 2 | n/a | BEGIN |
| 8 | 2 | n/a | BEGIN |
| 9 | 2 | n/a | BEGIN |
| 10 | 2 | n/a | BEGIN |
| 11 | 2 | n/a | BEGIN |
| 12 | 2 | n/a | BEGIN |
| 13 | 2 | n/a | BEGIN |
| 14 | 2 | n/a | BEGIN |
| 15 | 2 | n/a | BEGIN |
| 78 | 2 | n/a | _is_gz |
| 90 | 2 | n/a | _build__unzipped_fastq |
| 109 | 0 | n/a | _build__stats_handle |
| 117 | 0 | n/a | _build__sequence_info |
| 132 | 1 | n/a | _build__temp_directory |
| 140 | 0 | n/a | _build_output_directory |
| 144 | 0 | n/a | _build__current_directory |
| 153 | 1 | No | run_tradis |
| 211 | 2 | n/a | _filter |
| 226 | 8 | n/a | _check_filter |
| 252 | 2 | n/a | _remove |
| 266 | 2 | n/a | _map |
| 287 | 2 | n/a | _sam2bam |
| 297 | 2 | n/a | _sort_bam |
| 307 | 0 | n/a | _bamcheck |
| 317 | 0 | n/a | _make_plot |
| 338 | 0 | n/a | _reverse_plots |
| 361 | 0 | n/a | _stats |
| 415 | 0 | n/a | _write_stats_header |
| 435 | 0 | n/a | _plotname |
| 444 | 0 | n/a | _number_of_mapped_reads |
| 460 | 2 | n/a | BEGIN |