Subroutine Coverage
| blib/lib/Bio/ToolBox/parser/gff.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
25 |
38 |
65.7
|
| pod |
22 |
25 |
88.0
|
| line |
count |
pod |
subroutine |
|
286
|
1 |
n/a |
BEGIN |
|
287
|
1 |
n/a |
BEGIN |
|
288
|
1 |
n/a |
BEGIN |
|
295
|
11 |
Yes |
new |
|
368
|
593 |
Yes |
do_gene |
|
376
|
188 |
Yes |
do_exon |
|
384
|
272 |
Yes |
do_cds |
|
392
|
0 |
Yes |
do_utr |
|
400
|
34 |
Yes |
do_codon |
|
409
|
0 |
No |
do_name |
|
414
|
0 |
No |
share |
|
418
|
85 |
Yes |
simplify |
|
426
|
24 |
Yes |
version |
|
448
|
11 |
Yes |
open_file |
|
495
|
668 |
Yes |
fh |
|
499
|
13 |
Yes |
typelist |
|
503
|
587 |
Yes |
next_feature |
|
620
|
70 |
Yes |
next_top_feature |
|
632
|
4 |
Yes |
top_features |
|
643
|
7 |
Yes |
parse_file |
|
771
|
12 |
n/a |
_make_gene_parent |
|
806
|
0 |
n/a |
_make_rna_parent |
|
840
|
37 |
Yes |
find_gene |
|
929
|
0 |
Yes |
from_gff_string |
|
950
|
11 |
n/a |
_assign_gff_converter |
|
979
|
266 |
n/a |
_gff3_to_seqf |
|
1021
|
312 |
n/a |
_gtf_to_seqf_simple |
|
1108
|
2 |
n/a |
_gtf_to_seqf_full |
|
1201
|
0 |
n/a |
_gff2_to_seqf |
|
1217
|
580 |
n/a |
_gff_to_seqf |
|
1245
|
2852 |
Yes |
unescape |
|
1254
|
0 |
n/a |
_add_orphan |
|
1261
|
0 |
No |
check_orphanage |
|
1291
|
0 |
Yes |
orphans |
|
1301
|
0 |
Yes |
comments |
|
1311
|
0 |
Yes |
seq_ids |
|
1321
|
0 |
Yes |
seq_id_lengths |
|
1329
|
0 |
n/a |
_get_seq_ids |