| blib/lib/Bio/MUST/Apps/FortyTwo/AliProcessor.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| subroutine | 24 | 49 | 48.9 |
| pod | 0 | 7 | 0.0 |
| line | count | pod | subroutine |
|---|---|---|---|
| 4 | 1 | n/a | BEGIN |
| 5 | 1 | n/a | BEGIN |
| 7 | 1 | n/a | BEGIN |
| 8 | 1 | n/a | BEGIN |
| 10 | 1 | n/a | BEGIN |
| 12 | 1 | n/a | BEGIN |
| 13 | 1 | n/a | BEGIN |
| 14 | 1 | n/a | BEGIN |
| 15 | 1 | n/a | BEGIN |
| 16 | 1 | n/a | BEGIN |
| 17 | 1 | n/a | BEGIN |
| 18 | 1 | n/a | BEGIN |
| 19 | 1 | n/a | BEGIN |
| 21 | 1 | n/a | BEGIN |
| 22 | 1 | n/a | BEGIN |
| 23 | 1 | n/a | BEGIN |
| 24 | 1 | n/a | BEGIN |
| 25 | 1 | n/a | BEGIN |
| 26 | 1 | n/a | BEGIN |
| 27 | 1 | n/a | BEGIN |
| 28 | 1 | n/a | BEGIN |
| 29 | 1 | n/a | BEGIN |
| 30 | 1 | n/a | BEGIN |
| 31 | 1 | n/a | BEGIN |
| 147 | 0 | n/a | _build_integrator |
| 152 | 0 | n/a | _build_lookup |
| 157 | 0 | n/a | _build_blastdb |
| 164 | 0 | n/a | _build_para_blastdb |
| 177 | 0 | n/a | _build_new_seqs_by_org |
| 185 | 0 | n/a | _build_ali_seqs_by_org |
| 193 | 0 | n/a | _build_non_seqs_by_org |
| 206 | 0 | n/a | _split_seqs_by_org |
| 223 | 0 | n/a | _build_query_seqs |
| 245 | 0 | n/a | _build_best_hits_by_ref_org |
| 345 | 0 | No | get_longest_query_seq |
| 373 | 0 | No | check_brh_among_best_hits |
| 433 | 0 | n/a | __ANON__ |
| 443 | 0 | No | merge_chunks |
| 455 | 0 | n/a | __ANON__ |
| 460 | 0 | n/a | __ANON__ |
| 492 | 0 | n/a | __ANON__ |
| 514 | 0 | No | mark_redundant_seqs |
| 528 | 0 | n/a | __ANON__ |
| 534 | 0 | n/a | __ANON__ |
| 542 | 0 | n/a | __ANON__ |
| 556 | 0 | No | mark_lengthened_seqs |
| 587 | 0 | No | reorder_new_seqs |
| 592 | 0 | n/a | __ANON__ |
| 607 | 0 | No | BUILD |