| line |
!l |
l&&!r |
l&&r |
condition |
|
344
|
2 |
1 |
0 |
$self->{'dirty'} and $self->{'write'} |
|
474
|
0 |
0 |
0 |
$scaled_value == 0 and (my $span = $self->span) > 1 |
|
502
|
0 |
0 |
0 |
@_ == 2 and ref $_[1] eq 'ARRAY' |
|
511
|
4 |
0 |
0 |
ref $_[0] and ref $_[0] eq 'ARRAY' |
|
590
|
57 |
2775 |
0 |
defined $last_val and $last_val != $v |
|
656
|
4 |
0 |
0 |
$length / $samples > 100 and $step == 1 |
|
715
|
4 |
0 |
0 |
defined $self->window and $self->window > 1 |
|
869
|
3809 |
0 |
0 |
ref $values and ref $values eq 'ARRAY' |
|
892
|
0 |
0 |
4 |
ref $values and ref $values eq 'ARRAY' |
| line |
l |
!l |
condition |
|
239
|
2 |
0 |
$path ||= '' |
|
245
|
0 |
0 |
$path || 'temporary file' |
|
247
|
1 |
1 |
$options ||= {} |
|
254
|
1 |
1 |
eval {
do {
$self->_readoptions
}
} || {} |
|
258
|
0 |
2 |
$merged_options{'version'} ||= 0 |
|
259
|
2 |
0 |
$merged_options{'seqid'} ||= 'chrUnknown' |
|
260
|
2 |
0 |
$merged_options{'min'} ||= 0 |
|
261
|
2 |
0 |
$merged_options{'max'} ||= 255 |
|
262
|
2 |
0 |
$merged_options{'mean'} ||= 128 |
|
263
|
2 |
0 |
$merged_options{'stdev'} ||= 255 |
|
264
|
1 |
1 |
$merged_options{'trim'} ||= 'none' |
|
265
|
2 |
0 |
$merged_options{'step'} ||= 1 |
|
266
|
0 |
2 |
$merged_options{'start'} ||= 0 |
|
337
|
0 |
0 |
$self->{'smoothing'} || 'mean' |
|
418
|
1 |
0 |
shift() || 1 |
|
556
|
1 |
0 |
$start ||= 1 |
|
624
|
0 |
0 |
eval {
do {
$self->_readoptions
}
} || {} |
|
905
|
2 |
0 |
$max - $min || 0.001 |
| line |
l |
!l&&r |
!l&&!r |
condition |
|
249
|
0 |
2 |
0 |
ref $class || $class |
|
267
|
2 |
0 |
0 |
$merged_options{'span'} ||= $merged_options{'step'} |
|
309
|
1 |
1 |
0 |
$option eq 'min' or $option eq 'max' |
|
457
|
0 |
0 |
0 |
not exists $self->{'end'} or $self->{'end'} < $end |
|
464
|
1 |
3808 |
0 |
not exists $self->{'end'} or $self->{'end'} < $position |
|
557
|
1 |
0 |
0 |
$end ||= $self->end |
|
632
|
0 |
0 |
0 |
not defined $self->{'end'} or $self->{'end'} < $end |
|
650
|
0 |
4 |
0 |
$samples ||= $length |
|
676
|
0 |
0 |
0 |
not defined $max or $max < $_ |
|
781
|
0 |
0 |
0 |
$window ||= $self->window |
|
783
|
0 |
0 |
0 |
$smoothing eq 'none' or $window < 2 |
|
823
|
0 |
0 |
0 |
not defined $max or $max < $v |
|
833
|
0 |
0 |
0 |
not defined $min or $min > $v |
|
859
|
0 |
0 |
0 |
not exists $self->{'end'} or $self->{'end'} < $new_end |