| blib/lib/Bio/FdrFet.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| subroutine | 30 | 30 | 100.0 |
| pod | 13 | 15 | 86.6 |
| line | count | pod | subroutine |
|---|---|---|---|
| 3 | 1 | n/a | BEGIN |
| 4 | 1 | n/a | BEGIN |
| 5 | 1 | n/a | BEGIN |
| 6 | 1 | n/a | BEGIN |
| 153 | 4 | Yes | new |
| 185 | 8 | Yes | fdr_cutoff |
| 204 | 4 | Yes | verbose |
| 246 | 4 | Yes | universe |
| 283 | 5380 | Yes | add_to_pathway |
| 318 | 45396 | Yes | add_to_genes |
| 339 | 4 | Yes | genes |
| 355 | 9 | No | pathways |
| 390 | 7736 | Yes | pathway_result |
| 425 | 999 | Yes | pathway_desc |
| 437 | 28 | Yes | pathway_genes |
| 451 | 4 | Yes | fdr_position |
| 473 | 1 | Yes | gene_count |
| 493 | 7744 | Yes | calculate |
| 506 | 8 | n/a | _check_fdr_cutoff |
| 522 | 50776 | n/a | _check_args |
| 541 | 8763 | n/a | _check_pathway_arg |
| 550 | 5 | n/a | _sort_by_pvals |
| 563 | 4 | n/a | _calc_fdrs |
| 575 | 140 | n/a | _fdr |
| 585 | 4 | n/a | _clean_genes |
| 629 | 2 | n/a | _clean_unused_genes |
| 658 | 4 | n/a | _calculate_fets |
| 751 | 980 | No | log10 |
| 756 | 224 | n/a | _complete_all_results_array |
| 766 | 1 | n/a | BEGIN |