Subroutine Coverage
| blib/lib/Bio/FastParsers/Blast/Xml/Hsp.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
30 |
41 |
73.1
|
| pod |
37 |
37 |
100.0
|
| line |
count |
pod |
subroutine |
|
4
|
7 |
n/a |
BEGIN |
|
5
|
7 |
n/a |
BEGIN |
|
9
|
7 |
n/a |
BEGIN |
|
39
|
2 |
Yes |
align_len |
|
44
|
0 |
Yes |
bit_score |
|
49
|
0 |
Yes |
density |
|
54
|
0 |
Yes |
evalue |
|
59
|
0 |
Yes |
gaps |
|
64
|
2 |
Yes |
hit_frame |
|
69
|
2424 |
Yes |
hit_from |
|
74
|
1861 |
Yes |
hit_to |
|
79
|
0 |
Yes |
hseq |
|
84
|
56 |
Yes |
identity |
|
89
|
40 |
Yes |
midline |
|
94
|
203 |
Yes |
num |
|
99
|
0 |
Yes |
pattern_from |
|
104
|
0 |
Yes |
pattern_to |
|
109
|
564 |
Yes |
positive |
|
114
|
0 |
Yes |
qseq |
|
119
|
2 |
Yes |
query_frame |
|
124
|
1861 |
Yes |
query_from |
|
129
|
1861 |
Yes |
query_to |
|
134
|
258 |
Yes |
score |
|
143
|
0 |
Yes |
expect |
|
148
|
1 |
Yes |
qcov |
|
153
|
0 |
Yes |
scov |
|
158
|
1 |
Yes |
pident |
|
163
|
0 |
Yes |
ppos |
|
169
|
2 |
Yes |
query_len |
|
175
|
2 |
Yes |
hit_len |
|
180
|
7 |
n/a |
BEGIN |
|
185
|
1 |
Yes |
hit_strand |
|
191
|
620 |
Yes |
hit_start |
|
198
|
620 |
Yes |
hit_end |
|
205
|
1 |
Yes |
query_strand |
|
211
|
620 |
Yes |
query_start |
|
218
|
620 |
Yes |
query_end |
|
225
|
1 |
Yes |
query_coverage |
|
233
|
1 |
Yes |
subject_coverage |
|
241
|
1 |
Yes |
percentage_identity |
|
247
|
1 |
Yes |
percentage_positive |