| line |
true |
false |
branch |
|
41
|
1554 |
10703 |
if @_ > 0 |
|
53
|
6 |
0 |
$@ ? : |
|
85
|
107 |
391 |
if ($self->is_empty) |
|
94
|
205 |
392 |
$lower == $upper ? : |
|
139
|
21 |
3 |
if (@spans) { } |
|
158
|
125 |
3 |
if (@sets) { } |
|
169
|
2 |
17 |
if ($self->is_empty) |
|
178
|
6 |
14 |
$lower == $upper ? : |
|
182
|
17 |
0 |
if (@runlists) { } |
|
206
|
247 |
6157 |
$self->edge_size == 0 ? : |
|
245
|
101 |
100 |
unless $pos & 1 |
|
256
|
1 |
6 |
if $pos & 1 |
|
266
|
0 |
40156 |
if (scalar @ranges != 2) |
|
274
|
0 |
40156 |
if ($from > $to) |
|
280
|
9931 |
30225 |
if ($from_pos & 1) |
|
283
|
7289 |
32867 |
if ($to_pos & 1) |
|
296
|
0 |
31307 |
if (scalar(@ranges) % 2 == 1) |
|
322
|
6447 |
1673 |
if (ref $first eq 'AlignDB::IntSpan') { } |
|
|
815 |
858 |
elsif (&isint($first)) { } |
|
326
|
41 |
774 |
if (scalar @_ > 0) { } |
|
347
|
41 |
5139 |
if ($self->is_empty) { } |
|
354
|
2536 |
2603 |
if ($edges_ref->[0] == $NEG_INF) { } |
|
361
|
2536 |
2603 |
if ($edges_ref->[-1] == $POS_INF) { } |
|
386
|
861 |
0 |
if (ref $first eq 'AlignDB::IntSpan') { } |
|
|
0 |
0 |
elsif (&isint($first)) { } |
|
390
|
0 |
0 |
if (scalar @_ > 0) { } |
|
417
|
0 |
141 |
if $self->is_empty |
|
461
|
26 |
141 |
if $self->is_empty |
|
473
|
4 |
98 |
if $self->is_empty |
|
497
|
40 |
88 |
if ($self->edge_size != $supplied->edge_size) |
|
505
|
18 |
250 |
if ($edges_a[$i] != $edges_b[$i]) |
|
534
|
9 |
27 |
$result ? : |
|
543
|
9 |
27 |
$result ? : |
|
549
|
8 |
13 |
if ($index == 0 or abs $index > $self->cardinality) |
|
552
|
7 |
6 |
$index < 0 ? : |
|
569
|
3 |
6 |
if ($index > $element_before + $span_size) { } |
|
594
|
5 |
7 |
if ($index > $element_after + $span_size) { } |
|
619
|
8 |
8 |
if ($member >= $lower and $member <= $upper) { } |
|
637
|
2 |
9 |
if ($from < 1) |
|
660
|
45 |
30 |
if ($offset <= $span_size) { } |
|
670
|
11 |
45 |
unless @edges |
|
689
|
8 |
37 |
unless (defined $length) |
|
693
|
2 |
35 |
if ($length <= 0) |
|
703
|
28 |
26 |
if ($length <= $span_size) { } |
|
712
|
28 |
7 |
if (@$edges_ref) |
|
723
|
0 |
63 |
if ($self->is_empty) { } |
|
734
|
0 |
63 |
if ($self->is_empty) { } |
|
748
|
60 |
90 |
if (&$code_ref()) |
|
765
|
224 |
0 |
if (defined $element) |
|
803
|
9 |
3 |
$_ > $end ? : |
|
|
5 |
12 |
$_ < $start ? : |
|
817
|
5 |
1 |
if ($self->is_not_empty) |
|
829
|
1 |
13 |
if ($self->is_empty or $self->is_universal) { } |
|
838
|
13 |
0 |
if ($c_set->is_neg_inf) |
|
842
|
13 |
0 |
if ($c_set->is_pos_inf) |
|
862
|
34 |
4 |
if ($lower != $self->NEG_INF) |
|
865
|
34 |
4 |
if ($upper != $self->POS_INF) |
|
868
|
32 |
6 |
if $lower <= $upper |
|
906
|
8 |
0 |
if ($maxlength > 0) |
|
908
|
9 |
2 |
if ($hole->size <= $maxlength) |
|
926
|
0 |
28 |
unless $self->size and $supplied->size |
|
929
|
4 |
24 |
if $overlap |
|
936
|
9 |
20 |
$d1 < $d2 ? : |
|
937
|
27 |
2 |
if (not defined $min_d or $d < $min_d) |
|
952
|
4 |
7 |
if (ref $supplied eq 'AlignDB::IntSpan') { } |
|
|
7 |
0 |
elsif (&isint($supplied)) { } |
|
973
|
5 |
2 |
if ($pos & 1) |
|
987
|
4 |
0 |
if ($self->overlap($supplied)) |
|
989
|
5 |
3 |
if $subset->overlap($supplied) |
|
1001
|
3 |
7 |
if (ref $supplied eq 'AlignDB::IntSpan') { } |
|
|
7 |
0 |
elsif (&isint($supplied)) { } |
|
1014
|
2 |
17 |
if $s->overlap($ss) |
|
1016
|
14 |
3 |
if (not defined $min_d or $d <= $min_d) |
|
1017
|
2 |
12 |
if (defined $min_d and $d == $min_d) { } |
|
1035
|
5 |
8 |
if $index == 0 or abs $index > $self->span_size |
|
1039
|
1 |
7 |
$index < 0 ? : |
|
1069
|
117 |
747 |
if $runlist eq $self->EMPTY_STRING |
|
1074
|
199 |
966 |
if ($run =~ /^ (-?\d+) $/x) { } |
|
|
956 |
10 |
elsif ($run =~ /^ (-?\d+) - (-?\d+) $/x) { } |
|
1078
|
2 |
954 |
if $1 > $2 |
|
1094
|
688 |
4 |
if (defined $supplied and ref $supplied eq 'AlignDB::IntSpan') { } |
|
1118
|
33291 |
57709 |
if ($val < $edges_ref->[$mid]) { } |
|
|
49155 |
8554 |
elsif ($val > $edges_ref->[$mid]) { } |