| line |
true |
false |
branch |
|
128
|
1415 |
5805 |
if (@_) |
|
149
|
653 |
2887 |
if @_ |
|
186
|
0 |
0 |
unless $self->subset_list |
|
|
0 |
0 |
if grep {$_ eq $subset;} @{[] unless $self->subset_list;} |
|
202
|
41 |
0 |
if @_ |
|
244
|
8 |
0 |
if @_ |
|
264
|
36 |
160 |
if @_ |
|
282
|
0 |
53 |
unless (ref $dbxref) |
|
284
|
0 |
0 |
unless @rest |
|
289
|
0 |
53 |
unless UNIVERSAL::isa($dbxref, 'GO::Model::Xref') |
|
290
|
36 |
17 |
unless $self->definition_dbxref_list |
|
317
|
0 |
0 |
unless $self->synonym_list |
|
318
|
0 |
0 |
if (grep {$_ eq $str;} @syns) |
|
358
|
2 |
9 |
if (@_) |
|
364
|
0 |
5 |
unless $$sbt{$_} |
|
371
|
0 |
0 |
unless (shift())->{'_synonyms_by_type_idx'} |
|
377
|
2 |
156 |
if (@_) { } |
|
381
|
100 |
56 |
unless $$self{'_synonyms_by_type_idx'} |
|
420
|
0 |
0 |
if (@_) |
|
439
|
0 |
0 |
if (@_) |
|
501
|
0 |
173 |
unless ($ns) |
|
535
|
0 |
0 |
if (@_) |
|
566
|
0 |
755 |
unless (ref $dbxref) |
|
568
|
0 |
0 |
unless @rest |
|
573
|
0 |
755 |
unless UNIVERSAL::isa($dbxref, 'GO::Model::Xref') |
|
574
|
755 |
0 |
unless $self->dbxref_list |
|
604
|
0 |
0 |
if @_ |
|
605
|
0 |
0 |
$$self{'is_obsolete'} ? : |
|
616
|
12 |
0 |
if @_ |
|
617
|
12 |
0 |
$$self{'is_root'} ? : |
|
639
|
0 |
1154 |
if ($al) |
|
640
|
0 |
0 |
if (!ref($al) eq 'ARRAY') |
|
644
|
0 |
0 |
unless $$self{'association_list'} |
|
649
|
829 |
325 |
unless (defined $$self{'association_list'}) |
|
650
|
0 |
829 |
if (not defined $self->apph) { } |
|
656
|
829 |
0 |
unless $$self{'association_list'} |
|
658
|
0 |
0 |
unless ($gene) |
|
661
|
0 |
0 |
unless ($$self{'association_hash'}{$gene->acc}) |
|
668
|
0 |
0 |
if ($sort_by and !$$self{'association_list_sort_by'} || $$self{'association_list_sort_by'} ne $sort_by) |
|
671
|
0 |
0 |
ref $sort_by ? : |
|
674
|
0 |
0 |
unless $$self{'association_list'} |
|
682
|
0 |
0 |
if ($sortk eq 'gene_product') { } |
|
|
0 |
0 |
elsif ($sortk eq 'ev_code') { } |
|
737
|
79 |
94 |
unless ($$self{'association_list'}) |
|
741
|
0 |
173 |
if (ref $assoc ne 'GO::Model::Association') |
|
748
|
131 |
42 |
unless ($$self{'association_hash'}{$gene->acc}) |
|
769
|
0 |
0 |
unless $assoc->isa('GO::Model::Association') |
|
770
|
0 |
0 |
unless ($$self{'selected_association_list'}) |
|
786
|
0 |
0 |
unless (defined $$self{'association_list'}) |
|
789
|
0 |
0 |
if @_ |
|
822
|
0 |
0 |
unless $$self{'association_list'} |
|
|
0 |
0 |
unless (@{[] unless $$self{'association_list'};}) |
|
826
|
0 |
0 |
if @_ |
|
828
|
0 |
0 |
if (not defined $$self{'n_associations'} and $$self{'association_list'}) |
|
833
|
0 |
0 |
unless $self->association_list |
|
836
|
0 |
0 |
unless (defined $$self{'n_associations'}) |
|
869
|
0 |
0 |
unless ($ph{$gp->id}) |
|
953
|
0 |
0 |
if @_ |
|
954
|
0 |
0 |
if (not defined $$self{'n_deep_products'} or $$self{'n_deep_products'} eq 'recount') { } |
|
967
|
0 |
0 |
if @_ |
|
968
|
0 |
0 |
if (not defined $$self{'n_deep_products_grouped_by_taxid'} or $$self{'n_deep_products_grouped_by_taxid'} eq 'recount') { } |
|
995
|
0 |
0 |
if @_ |
|
996
|
0 |
0 |
if (not defined $$self{'n_products'} or $$self{'n_products'} eq 'recount') |
|
1006
|
0 |
0 |
unless $self->association_hash |
|
1050
|
0 |
0 |
if @_ |
|
1056
|
0 |
0 |
if @_ |
|
1064
|
0 |
0 |
if @_ |
|
1065
|
0 |
0 |
unless ($$self{'_stag'}) |
|
1083
|
0 |
0 |
if ($template eq 'shallow') |
|
1093
|
0 |
0 |
if ($template =~ /no.*assoc/) |
|
1102
|
0 |
0 |
if ($template eq 'all') |
|
1118
|
0 |
5 |
unless $self->synonym_list |
|
1119
|
5 |
0 |
unless $self->dbxref_list |
|
1120
|
0 |
5 |
if ($suppress) { } |
|
1121
|
0 |
0 |
unless (ref $suppress) |
|
1133
|
5 |
0 |
if ($escape) |
|
1151
|
0 |
5 |
$obs_l && @$obs_l ? : |
|
|
0 |
5 |
@xrefs ? : |
|
|
1 |
4 |
@syns ? : |
|
1167
|
0 |
0 |
unless $self->dbxref_list |