| line |
true |
false |
branch |
|
54
|
0 |
0 |
if ($$self{'clust'}{'dist'} == 10000000000 or $$self{'clust'}{'dist'} == 0) |
|
67
|
0 |
0 |
$s1 > 0 ? : |
|
68
|
0 |
0 |
$s2 > 0 ? : |
|
71
|
0 |
0 |
if ($L_min != 10000000000 and defined $$self{'clust'}{'dist'}) { } |
|
89
|
0 |
0 |
$di < 0 ? : |
|
94
|
0 |
0 |
$di < 0 ? : |
|
109
|
0 |
0 |
$di < 0 ? : |
|
119
|
0 |
0 |
if (not $tag1 and $d > 200000) |
|
123
|
0 |
0 |
if ($d > 1000000) |
|
128
|
0 |
0 |
if ($w_loc < 0 or $w_loc >= $nsite) |
|
130
|
0 |
0 |
unless ($tag1) |
|
147
|
0 |
0 |
if ($info ne '0') |
|
151
|
0 |
0 |
unless defined $end |
|
160
|
0 |
0 |
unless open DIFF, '<', $f |
|
165
|
0 |
0 |
if $site = &parse_site($_, $f, $ln, \@icol) |
|
167
|
0 |
0 |
if $site |
|
170
|
0 |
0 |
if ($site = &parse_site($_, $f, $ln, \@icol)) { } |
|
186
|
0 |
0 |
if ($file =~ /((h[0-9]+k[0-9]+((me[0-9]+)|ac))|(polII)|(pol2))/i) { } |
|
188
|
0 |
0 |
if ($rec =~ /^(\S+)\t([0-9]+)\t([0-9]+)/) { } |
|
193
|
0 |
0 |
if ($c > 0 and $c <= @cells) |
|
198
|
0 |
0 |
if (@vinfo > 0) |
|
217
|
0 |
0 |
if (@{$$self{'siteList'};} > 1) |
|
240
|
0 |
0 |
unless $chr1 eq $chr2 |
|
248
|
0 |
0 |
if (@{$$self{'siteList'};} < 2) |
|
264
|
0 |
0 |
unless (same_chr($l_site, $r_site)) |
|
267
|
0 |
0 |
if ($d < 10000000000) |
|
278
|
0 |
0 |
$tot_seg > 0 ? : |
|
291
|
0 |
0 |
unless (same_chr($l_site, $r_site)) |
|
294
|
0 |
0 |
if ($$l_site{'siteCenter'} > $$r_site{'siteCenter'}) |
|
322
|
0 |
0 |
if ($$self{'clust'}{'from'} < $$self{'clust'}{'to'}) { } |
|
334
|
0 |
0 |
if ($$self{'clust'}{'from'} > 0) { } |
|
346
|
0 |
0 |
if ($$self{'curPos'} < @{$$self{'siteList'};}) { } |
|
360
|
0 |
0 |
if ($$self{'clust'}{'to'} > $$self{'clust'}{'from'}) { } |
|
386
|
0 |
0 |
if ($from < $to) { } |
|
457
|
0 |
0 |
unless (defined $$self{'f_handler'}) |
|
476
|
0 |
0 |
if (defined $h) { } |
|
487
|
0 |
0 |
if (defined $h) { } |
|
498
|
0 |
0 |
unless open $h, '>', $f |
|
505
|
0 |
0 |
if defined $$self{'f_handler'} |