| line |
true |
false |
branch |
|
104
|
0 |
0 |
if ($$rwin{'pval'} < $$self{'winP'}) |
|
116
|
0 |
0 |
if (defined $$self{'pval'}) |
|
123
|
0 |
0 |
if ($$gdt{'bkgEnr'}) { } |
|
126
|
0 |
0 |
$btr_m > 0 ? : |
|
127
|
0 |
0 |
$bco_m > 0 ? : |
|
172
|
0 |
0 |
if ($$gdt{'bkgEnr'}) |
|
185
|
0 |
0 |
if (@{$$gdt{'bedBtr'};}) |
|
193
|
0 |
0 |
if (@{$$gdt{'bedBco'};}) |
|
201
|
0 |
0 |
if (@{$$self{'btr_cnt'};} == 0) |
|
204
|
0 |
0 |
if (@{$$self{'bco_cnt'};} == 0) |
|
226
|
0 |
0 |
unless defined $$self{'chrom'} |
|
302
|
0 |
0 |
unless $keepdi |
|
318
|
0 |
0 |
if ($$self{'winN'} <= $$self{'maxN'} - 1) { } |
|
352
|
0 |
0 |
if ($$self{'winN'} < $$self{'maxN'}) { } |
|
414
|
0 |
0 |
if ($$gdt{'bkgEnr'}) |
|
427
|
0 |
0 |
if (@{$$gdt{'bedBtr'};}) |
|
435
|
0 |
0 |
if (@{$$gdt{'bedBco'};}) |
|
443
|
0 |
0 |
if (@{$$self{'btr_cnt'};} == 0) |
|
446
|
0 |
0 |
if (@{$$self{'bco_cnt'};} == 0) |
|
469
|
0 |
0 |
if @{$$gdt{'bedTr'};} == 0 or @{$$gdt{'bedCo'};} == 0 |
|
472
|
0 |
0 |
if ($$gdt{'bkgEnr'} and $$gdt{'useBkg'} > 0) { } |
|
473
|
0 |
0 |
unless ($$self{'retrieved'}) |
|
479
|
0 |
0 |
if (not $c or $c and $btr_m and $c / $btr_m <= $$gdt{'useBkg'}) |
|
484
|
0 |
0 |
unless ($tagTr) |
|
486
|
0 |
0 |
if (not $c or $c and $bco_m and $c / $bco_m <= $$gdt{'useBkg'}) |
|
496
|
0 |
0 |
if (not $rawcnt or $rawcnt <= $$gdt{'meanTr'}[$i] + $$gdt{'nsd'} * $$gdt{'stdTr'}[$i]) |
|
502
|
0 |
0 |
unless ($tagTr) |
|
506
|
0 |
0 |
if (not $rawcnt or $rawcnt <= $$gdt{'meanCo'}[$i] + $$gdt{'nsd'} * $$gdt{'stdCo'}[$i]) |
|
521
|
0 |
0 |
unless defined $$self{'chrom'} |
|
522
|
0 |
0 |
unless ($$self{'retrieved'}) |
|
527
|
0 |
0 |
if @{$$self{'tr_cnt'};} == 0 or @{$$self{'co_cnt'};} == 0 |
|
528
|
0 |
0 |
unless defined $$self{'rsumTr'} and defined $$self{'rsumCo'} |
|
534
|
0 |
0 |
if ($tr_m == 0 and $co_m == 0) { } |
|
540
|
0 |
0 |
if ($co_m == 0) { } |
|
542
|
0 |
0 |
$$self{'logFC'} > 0 ? : |
|
544
|
0 |
0 |
if ($meth eq 'tt') { } |
|
|
0 |
0 |
elsif ($meth eq 'nb') { } |
|
|
0 |
0 |
elsif ($meth eq 'gt' or $meth eq 'cs') { } |
|
569
|
0 |
0 |
if ($meth eq 'gt') { } |
|
609
|
0 |
0 |
if ($var < $eps * $base_mean) |
|
640
|
0 |
0 |
if (defined $$rreg{'pval'}) |
|
649
|
0 |
0 |
if (defined $$rreg{'pval'}) |
|
658
|
0 |
0 |
if (@{$$rl{'regList'};}) |
|
673
|
0 |
0 |
if $$self{'adjusted'} |
|
675
|
0 |
0 |
if (@_ > 0) { } |
|
704
|
0 |
0 |
unless ($$self{'adjusted'}) |