| line |
true |
false |
branch |
|
47
|
0 |
0 |
if (@_ > 2) |
|
65
|
0 |
0 |
unless $chr1 eq $chr2 |
|
67
|
0 |
0 |
if ($cmpby eq 'end') { } |
|
76
|
0 |
0 |
if (exists $$a{'chr'}) { } |
|
|
0 |
0 |
elsif (exists $$a{'chrom'}) { } |
|
79
|
0 |
0 |
if (exists $$b{'chr'}) { } |
|
|
0 |
0 |
elsif (exists $$b{'chrom'}) { } |
|
106
|
0 |
0 |
if (@_ > 2) |
|
111
|
0 |
0 |
if (compare2($cur_intrv, $lowest_intrv, $cmpby) < 0) |
|
117
|
0 |
0 |
$cmpby eq 'end' ? : |
|
124
|
0 |
0 |
if ($$refintrv1{'chrom'} eq $$refintrv2{'chrom'}) |
|
125
|
0 |
0 |
if ($$refintrv1{'start'} <= $$refintrv2{'end'} and $$refintrv1{'end'} >= $$refintrv2{'start'}) |
|
145
|
0 |
0 |
unless open HBED, '<', $bedfile |
|
153
|
0 |
0 |
if (@cells < 6) |
|
160
|
0 |
0 |
if ($strand eq '+') { } |
|
173
|
0 |
0 |
unless open HBED, '<', $bedfile |
|
183
|
0 |
0 |
if (@cells < 6) |
|
190
|
0 |
0 |
if ($strand eq '+') { } |
|
205
|
0 |
0 |
unless open HCHR, '<', $chrfile |
|
211
|
0 |
0 |
if $_ eq '' |
|
213
|
0 |
0 |
if @cells < 2 |
|
215
|
0 |
0 |
if ($chrom =~ /^\S+$/ and $len =~ /^[0-9]+$/) { } |
|
226
|
0 |
0 |
unless open HCHR, '<', $chrfile |
|
232
|
0 |
0 |
if $_ eq '' |
|
234
|
0 |
0 |
if @cells < 2 |
|
236
|
0 |
0 |
if ($chrom =~ /^\S+$/ and $len =~ /^[0-9]+$/) { } |
|
263
|
0 |
0 |
unless open $fh, '>', $chrfile |
|
267
|
0 |
0 |
unless open HBED, '<', $bedfile |
|
274
|
0 |
0 |
if $_ eq '' |
|
276
|
0 |
0 |
if (@cells < 6) |
|
281
|
0 |
0 |
if (exists $hsh_chrfile{$chrom}) { } |
|
300
|
0 |
0 |
unless unlink $file |