| line |
true |
false |
branch |
|
15
|
0 |
3 |
unless ($version) |
|
24
|
0 |
0 |
unless ($version) |
|
34
|
0 |
4 |
-l $_ ? : |
|
38
|
4 |
2 |
-e $path ? : |
|
59
|
0 |
1 |
if (ref $self) { } |
|
60
|
0 |
0 |
if $$self{'base_temp_directory'} |
|
65
|
0 |
1 |
if $base_temp_directory |
|
69
|
1 |
0 |
unless ($template) |
|
82
|
0 |
1 |
if ($ENV{'LSB_JOBID'}) |
|
84
|
0 |
0 |
if -d $lsf_possible_tempdir |
|
90
|
0 |
1 |
if ($ENV{'GENOME_SYS_NO_CLEANUP'}) |
|
97
|
0 |
1 |
if (ref $self) { } |
|
105
|
0 |
0 |
unless ($dir) |
|
116
|
0 |
1 |
unless ($name) |
|
121
|
0 |
1 |
if (-e $path) |
|
125
|
0 |
1 |
if (not $path or $path eq '/') |
|
136
|
0 |
0 |
unless ($fh) |
|
139
|
0 |
0 |
if wantarray |
|
153
|
0 |
2 |
unless (defined $directory) |
|
159
|
1 |
1 |
if -d $directory |
|
165
|
0 |
1 |
if ($errors and @$errors) |
|
174
|
0 |
1 |
unless (-d $directory) |
|
184
|
0 |
0 |
unless (defined $target) |
|
188
|
0 |
0 |
unless (defined $link) |
|
192
|
0 |
0 |
unless (-e $target) |
|
196
|
0 |
0 |
if (-e $link) |
|
200
|
0 |
0 |
if (-l $link) |
|
204
|
0 |
0 |
unless (symlink $target, $link) |
|
213
|
0 |
0 |
if ($file eq '-') |
|
214
|
0 |
0 |
if ($rw eq 'r') { } |
|
|
0 |
0 |
elsif ($rw eq 'w') { } |
|
225
|
0 |
0 |
if $fh |
|
232
|
0 |
0 |
unless (defined $file) |
|
236
|
0 |
0 |
if ($file eq '-') |
|
240
|
0 |
0 |
unless (-e $file) |
|
244
|
0 |
0 |
unless (-f $file) |
|
248
|
0 |
0 |
unless (-r $file) |
|
258
|
0 |
0 |
unless $self->validate_file_for_reading($file) |
|
280
|
0 |
0 |
unless defined $skip_if_output_is_present |
|
281
|
0 |
0 |
if (%params) |
|
286
|
0 |
0 |
if ($output_files and @$output_files) |
|
288
|
0 |
0 |
if ($skip_if_output_is_present and @$output_files == @found_outputs) |
|
299
|
0 |
0 |
if ($input_files and @$input_files) |
|
301
|
0 |
0 |
if (@missing_inputs) |
|
302
|
0 |
0 |
-e $_ ? : |
|
307
|
0 |
0 |
if ($input_directories and @$input_directories) |
|
309
|
0 |
0 |
if (@missing_inputs) |
|
317
|
0 |
0 |
if ($exit_code == -1) { } |
|
|
0 |
0 |
elsif ($exit_code & 127) { } |
|
|
0 |
0 |
elsif ($exit_code >> 8 != 0) { } |
|
321
|
0 |
0 |
$exit_code & 128 ? : |
|
327
|
0 |
0 |
if ($allow_failed_exit_code) { } |
|
335
|
0 |
0 |
if ($output_files and @$output_files) |
|
338
|
0 |
0 |
if (@missing_output_files) |
|
339
|
0 |
0 |
if ($allow_zero_size_output_files and @$output_files == @missing_output_files) |
|
345
|
0 |
0 |
unless ($fh) |
|
355
|
0 |
0 |
if ($output_directories and @$output_directories) |
|
360
|
0 |
0 |
if (@missing_output_files or @missing_output_directories) |
|
361
|
0 |
0 |
unless unlink $_ |