| line |
true |
false |
branch |
|
196
|
2 |
0 |
if (defined $self->transcripts) { }
|
|
208
|
1 |
0 |
if (defined $self->transcripts) { }
|
|
220
|
350 |
0 |
if (defined $transcript and $transcript->isa('GenOO::Transcript')) { }
|
|
243
|
1 |
3 |
if (exists $counts{$exon->location} and $counts{$exon->location} == $transcript_count)
|
|
272
|
1 |
3 |
if (exists $counts{$exon->location} and $counts{$exon->location} == $transcript_count)
|
|
291
|
1 |
0 |
if ($transcript->is_coding)
|
|
361
|
355 |
0 |
if (defined $self->transcripts)
|
|
365
|
0 |
355 |
if (not defined $strand) { }
|
|
377
|
355 |
0 |
if (defined $self->transcripts)
|
|
381
|
0 |
355 |
if (not defined $chromosome) { }
|
|
393
|
193 |
0 |
if (defined $self->transcripts)
|
|
395
|
194 |
180 |
if (not defined $start or $start > $transcript->start)
|
|
401
|
0 |
193 |
if (not defined $start) { }
|
|
413
|
193 |
0 |
if (defined $self->transcripts)
|
|
415
|
235 |
139 |
if (not defined $stop or $stop < $transcript->stop)
|
|
421
|
0 |
193 |
if (not defined $stop) { }
|
|
448
|
0 |
2 |
if @e_regions < 2
|
|
467
|
0 |
0 |
unless $transcript->is_coding
|
|
468
|
0 |
0 |
unless defined $transcript->utr5
|
|
482
|
0 |
0 |
unless $transcript->is_coding
|
|
496
|
0 |
0 |
unless $transcript->is_coding
|
|
497
|
0 |
0 |
unless defined $transcript->utr3
|
|
514
|
4 |
12 |
if (defined $merge_region and $merge_region->overlaps_with_offset($exon, 1, 1)) { }
|
|
517
|
0 |
4 |
if $exon->stop > $merge_region->stop
|