| line |
true |
false |
branch |
|
97
|
0 |
0 |
defined $prf->{$_} ? :
|
|
98
|
0 |
0 |
defined $prf->{$_} ? :
|
|
99
|
0 |
0 |
defined $prf->{$_} ? :
|
|
103
|
0 |
0 |
$prf->{'score'} ? :
|
|
|
0 |
0 |
$prf->{$_} ? :
|
|
|
0 |
0 |
$force ? :
|
|
151
|
0 |
0 |
unless $p->{'f1'}
|
|
160
|
0 |
0 |
$f ? :
|
|
177
|
0 |
0 |
@funcs ? :
|
|
180
|
0 |
0 |
exists $p->{$_} ? :
|
|
191
|
0 |
0 |
$keyf ? :
|
|
193
|
0 |
0 |
exists $p->{$_} ? :
|
|
195
|
0 |
0 |
defined $p->{$_} ? :
|
|
208
|
0 |
0 |
defined $opts{'hlabel'} ? :
|
|
|
0 |
0 |
ref $that ? :
|
|
224
|
0 |
0 |
exists $opts{'label'} ? :
|
|
229
|
0 |
0 |
if $opts{'header'} // 1
|
|
237
|
0 |
0 |
defined $label ? :
|
|
261
|
0 |
0 |
ref $file ? :
|
|
262
|
0 |
0 |
unless ref $fh
|
|
265
|
0 |
0 |
if $opts{'body'} // 1
|
|
266
|
0 |
0 |
if $opts{'table'} // 1
|
|
274
|
0 |
0 |
defined $opts{'hlabel'} ? :
|
|
|
0 |
0 |
if $opts{'header'} // 1
|
|
277
|
0 |
0 |
exists $opts{'label'} ? :
|
|
286
|
0 |
0 |
defined $label ? :
|
|
292
|
0 |
0 |
if $opts{'table'} // 1
|
|
293
|
0 |
0 |
if $opts{'body'} // 1
|
|
294
|
0 |
0 |
unless ref $file
|
|
307
|
0 |
0 |
if not $func or $func =~ /^(?:f(?:req(?:uency)?)?(?:12)?)$/i
|
|
308
|
0 |
0 |
if $func =~ /^(?:f(?:req(?:uency)?)?(?:-?p(?:er)?)?(?:-?m(?:(?:ill)?ion)?)(?:12)?)$/i
|
|
309
|
0 |
0 |
if $func =~ /^(?:l(?:og)?-?f(?:req(?:uency)?)?(?:12)?)$/i
|
|
310
|
0 |
0 |
if $func =~ /^(?:l(?:og)?-?f(?:req(?:uency)?)?(?:-?p(?:er)?)?(?:-?m(?:(?:ill)?ion)?)(?:12)?)$/i
|
|
311
|
0 |
0 |
if $func =~ /^(?:ld|log-?dice)/i
|
|
312
|
0 |
0 |
if $func =~ /^(?:ll|log-?l(?:ikelihood)?)/i
|
|
313
|
0 |
0 |
if $func =~ /^(?:(?:lf)?mi(?:-?lf)?|mutual-?information-?(?:l(?:og)?)?-?f(?:req(?:uency)?)?)?$/i
|
|
314
|
0 |
0 |
if $func =~ /^(?:mi1|mutual-?information-?1|pmi1?)$/i
|
|
315
|
0 |
0 |
if $func =~ /^(?:mi3|mutual-?information-?3)$/i
|
|
331
|
0 |
0 |
unless $prf->{'score'} and $$prf{$prf->{'score'}}
|
|
333
|
0 |
0 |
if isInf($_)
|
|
415
|
0 |
0 |
$f12 >= 0 ? :
|
|
|
0 |
0 |
$denom ? :
|
|
441
|
0 |
0 |
$denom > 0 ? :
|
|
465
|
0 |
0 |
$denom ? :
|
|
488
|
0 |
0 |
$denom ? :
|
|
499
|
0 |
0 |
$_[0] > 0 ? :
|
|
505
|
0 |
0 |
$_[1] == 0 ? :
|
|
524
|
0 |
0 |
$N <= 0 ? :
|
|
532
|
0 |
0 |
$N && $f12 < $f1 * $f2 / $N ? :
|
|
562
|
0 |
0 |
unless my $score = $$prf{$prf->{'score'} // 'f12'}
|
|
567
|
0 |
0 |
if ((my $cutoff = $opts{'cutoff'} // '') ne '')
|
|
570
|
0 |
0 |
if $val < $cutoff
|
|
576
|
0 |
0 |
if (defined($kbest = $opts{'kbest'}) and $kbest > 0)
|
|
578
|
0 |
0 |
if (@keys > $kbest)
|
|
586
|
0 |
0 |
if (defined($kbesta = $opts{'kbesta'}) and $kbesta > 0)
|
|
588
|
0 |
0 |
if (@keys > $kbesta)
|
|
595
|
0 |
0 |
if (($opts{'return'} // '') eq 'bad')
|
|
596
|
0 |
0 |
lc($opts{'as'} // 'array') eq 'hash' ? :
|
|
598
|
0 |
0 |
exists $bad->{$_} ? :
|
|
|
0 |
0 |
lc($opts{'as'} // 'array') eq 'hash' ? :
|
|
616
|
0 |
0 |
unless my $score = $$prf{$prf->{'score'} // 'f12'}
|
|
620
|
0 |
0 |
if (defined $opts{'keep'})
|
|
621
|
0 |
0 |
UNIVERSAL::isa($opts{'keep'}, 'ARRAY') ? :
|
|
630
|
0 |
0 |
if (defined $opts{'drop'})
|
|
631
|
0 |
0 |
UNIVERSAL::isa($opts{'drop'}, 'ARRAY') ? :
|
|
636
|
0 |
0 |
if ((my $cutoff = $opts{'cutoff'} // '') ne '')
|
|
640
|
0 |
0 |
if $val < $cutoff
|
|
647
|
0 |
0 |
if (defined($kbest = $opts{'kbest'}) and $kbest > 0)
|
|
649
|
0 |
0 |
if (@trim > $kbest)
|
|
657
|
0 |
0 |
if (defined($kbesta = $opts{'kbesta'}) and $kbesta > 0)
|
|
659
|
0 |
0 |
if (@trim > $kbesta)
|
|
679
|
0 |
0 |
if (UNIVERSAL::can($i2s, 'i2s')) { }
|
|
|
0 |
0 |
elsif (UNIVERSAL::isa($i2s, 'CODE')) { }
|
|
697
|
0 |
0 |
if (UNIVERSAL::isa($i2s, 'HASH')) { }
|
|
|
0 |
0 |
elsif (UNIVERSAL::isa($i2s, 'ARRAY')) { }
|
|
728
|
0 |
0 |
if not exists $opts{'N'} or $opts{'N'}
|
|
729
|
0 |
0 |
if not exists $opts{'f1'} or $opts{'f1'}
|
|
752
|
0 |
0 |
if not ref $that and @$profiles == 1
|
|
753
|
0 |
0 |
ref $that ? :
|