Subroutine Coverage
| blib/lib/CracTools/Utils.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
27 |
40 |
67.5
|
| pod |
27 |
27 |
100.0
|
| line |
count |
pod |
subroutine |
|
7
|
8 |
n/a |
BEGIN |
|
8
|
8 |
n/a |
BEGIN |
|
10
|
8 |
n/a |
BEGIN |
|
11
|
8 |
n/a |
BEGIN |
|
15
|
1 |
Yes |
reverseComplement |
|
27
|
1 |
Yes |
reverse_tab |
|
42
|
0 |
Yes |
isVersionGreaterOrEqual |
|
62
|
50 |
Yes |
convertStrand |
|
67
|
0 |
Yes |
removeChrPrefix |
|
73
|
0 |
Yes |
addChrPrefix |
|
83
|
1 |
Yes |
encodePosListToBase64 |
|
116
|
1 |
Yes |
decodePosListInBase64 |
|
144
|
5 |
Yes |
seqFileIterator |
|
171
|
7 |
n/a |
__ANON__ |
|
190
|
7 |
n/a |
__ANON__ |
|
211
|
1 |
Yes |
pairedEndSeqFileIterator |
|
217
|
2 |
n/a |
__ANON__ |
|
229
|
0 |
Yes |
writeSeq |
|
241
|
1 |
Yes |
bedFileIterator |
|
246
|
1 |
Yes |
gffFileIterator |
|
253
|
1 |
Yes |
vcfFileIterator |
|
259
|
0 |
Yes |
chimCTFileIterator |
|
264
|
0 |
Yes |
bamFileIterator |
|
275
|
0 |
n/a |
__ANON__ |
|
282
|
0 |
Yes |
getSeqFromIndexedRef |
|
302
|
1 |
Yes |
parseBedLine |
|
340
|
1 |
Yes |
parseGFFLine |
|
344
|
4 |
n/a |
__ANON__ |
|
346
|
0 |
n/a |
__ANON__ |
|
371
|
1 |
Yes |
parseVCFLine |
|
391
|
0 |
Yes |
parseChimCTLine |
|
428
|
1 |
Yes |
parseSAMLineLite |
|
450
|
1 |
Yes |
parseCigarChain |
|
461
|
4 |
Yes |
getFileIterator |
|
475
|
1 |
n/a |
__ANON__ |
|
496
|
0 |
n/a |
__ANON__ |
|
525
|
35 |
n/a |
__ANON__ |
|
543
|
10 |
Yes |
getReadingFileHandle |
|
555
|
0 |
Yes |
getWritingFileHandle |
|
567
|
0 |
Yes |
getLineFromSeekPos |