Subroutine Coverage
| blib/lib/CracTools/SAMReader/SAMline.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
39 |
44 |
88.6
|
| pod |
39 |
39 |
100.0
|
| line |
count |
pod |
subroutine |
|
8
|
3 |
n/a |
BEGIN |
|
9
|
3 |
n/a |
BEGIN |
|
10
|
3 |
n/a |
BEGIN |
|
12
|
3 |
n/a |
BEGIN |
|
32
|
2 |
Yes |
hasEvent |
|
39
|
8 |
Yes |
new |
|
76
|
3 |
Yes |
isFlagged |
|
83
|
0 |
Yes |
getStrand |
|
93
|
0 |
Yes |
getOriginalSeq |
|
103
|
0 |
Yes |
getLocAsCracFormat |
|
109
|
0 |
Yes |
getPatch |
|
126
|
2 |
Yes |
line |
|
132
|
3 |
Yes |
updatedLine |
|
146
|
3 |
Yes |
qname |
|
156
|
6 |
Yes |
flag |
|
166
|
7 |
Yes |
rname |
|
176
|
3 |
Yes |
chr |
|
182
|
3 |
Yes |
pos |
|
192
|
3 |
Yes |
mapq |
|
202
|
4 |
Yes |
cigar |
|
212
|
3 |
Yes |
rnext |
|
222
|
3 |
Yes |
pnext |
|
232
|
3 |
Yes |
tlen |
|
242
|
4 |
Yes |
seq |
|
252
|
3 |
Yes |
qual |
|
262
|
1 |
Yes |
getOptionalField |
|
271
|
1 |
Yes |
getChimericAlignments |
|
299
|
1 |
Yes |
getCigarOperatorsCount |
|
312
|
1 |
Yes |
pSupport |
|
319
|
1 |
Yes |
pLoc |
|
326
|
1 |
Yes |
pairedChimera |
|
338
|
3 |
Yes |
isPairedClassified |
|
353
|
2 |
Yes |
genericInfo |
|
365
|
2 |
Yes |
isClassified |
|
387
|
3 |
Yes |
events |
|
399
|
3 |
Yes |
loadEvents |
|
486
|
2 |
Yes |
addEvent |
|
498
|
2 |
Yes |
removeEvent |
|
516
|
1 |
Yes |
updateEvent |
|
529
|
0 |
n/a |
__ANON__ |
|
590
|
2 |
Yes |
loadSamDetailed |
|
611
|
4 |
Yes |
loadPaired |
|
625
|
3 |
Yes |
expandCracLoc |
|
632
|
1 |
Yes |
compressCracLoc |