Subroutine Coverage

blib/lib/CracTools/SAMReader/SAMline.pm
Criterion Covered Total %
subroutine 39 44 88.6
pod 39 39 100.0


line count pod subroutine
8 4 n/a BEGIN
9 4 n/a BEGIN
10 4 n/a BEGIN
12 4 n/a BEGIN
32 2 Yes hasEvent
39 8 Yes new
76 3 Yes isFlagged
83 0 Yes getStrand
93 0 Yes getOriginalSeq
103 0 Yes getLocAsCracFormat
109 0 Yes getPatch
126 2 Yes line
132 3 Yes updatedLine
146 3 Yes qname
156 6 Yes flag
166 7 Yes rname
176 3 Yes chr
182 3 Yes pos
192 3 Yes mapq
202 4 Yes cigar
212 3 Yes rnext
222 3 Yes pnext
232 3 Yes tlen
242 4 Yes seq
252 3 Yes qual
262 1 Yes getOptionalField
271 1 Yes getChimericAlignments
299 1 Yes getCigarOperatorsCount
312 1 Yes pSupport
319 1 Yes pLoc
326 1 Yes pairedChimera
338 3 Yes isPairedClassified
353 2 Yes genericInfo
365 2 Yes isClassified
387 3 Yes events
399 3 Yes loadEvents
486 2 Yes addEvent
498 2 Yes removeEvent
516 1 Yes updateEvent
529 0 n/a __ANON__
590 2 Yes loadSamDetailed
611 4 Yes loadPaired
625 3 Yes expandCracLoc
632 1 Yes compressCracLoc