| line |
true |
false |
branch |
|
459
|
0 |
0 |
unless $self->indir or $self->vcfs
|
|
461
|
0 |
0 |
if ($self->indir)
|
|
473
|
0 |
0 |
unless -d $self->outdir
|
|
474
|
0 |
0 |
unless -d $self->outdir . '/annovar_interim'
|
|
475
|
0 |
0 |
if not -d $self->outdir . '/annovar_final'
|
|
487
|
0 |
0 |
if $self->vcfs
|
|
495
|
0 |
0 |
unless $self->vcfs
|
|
507
|
0 |
0 |
if ($#{$self->annovar_dbs;} == 0)
|
|
511
|
0 |
0 |
if ($#{$self->annovar_fun;} == 0)
|
|
516
|
0 |
0 |
unless $self->vcfs
|
|
517
|
0 |
0 |
if ($#{$self->vcfs;} == 0)
|
|
536
|
0 |
0 |
unless scalar @{$self->annovar_dbs;} == scalar @{$self->annovar_fun;}
|
|
565
|
0 |
0 |
unless $self->annotate_vcf
|
|
650
|
0 |
0 |
unless @samples
|
|
737
|
0 |
0 |
unless -d $self->outdir . '/vcf-annotate_interim'
|
|
738
|
0 |
0 |
unless -d $self->outdir . '/vcf-annotate_final'
|
|
761
|
0 |
0 |
if ($self->match_file(qr/gz$/)) { }
|
|
770
|
0 |
0 |
if (exists $self->annovar_cols->{$db}) { }
|
|
810
|
0 |
0 |
if (exists $self->annovar_cols->{$db}) { }
|
|
837
|
0 |
0 |
if scalar @{$self->samples->{$self->file};} == 1
|