| line |
count |
pod |
subroutine |
|
3
|
1 |
n/a |
BEGIN |
|
4
|
1 |
n/a |
BEGIN |
|
43
|
1 |
n/a |
BEGIN |
|
45
|
1 |
n/a |
BEGIN |
|
46
|
1 |
n/a |
BEGIN |
|
47
|
1 |
n/a |
BEGIN |
|
49
|
1 |
n/a |
BEGIN |
|
50
|
1 |
n/a |
BEGIN |
|
51
|
1 |
n/a |
BEGIN |
|
52
|
1 |
n/a |
BEGIN |
|
53
|
1 |
n/a |
BEGIN |
|
130
|
0 |
Yes |
getopt |
|
166
|
0 |
Yes |
file_list_from_argv |
|
208
|
1 |
Yes |
get_file_list |
|
223
|
56 |
n/a |
__ANON__ |
|
246
|
0 |
Yes |
delete_string_elements_by_indexes |
|
269
|
0 |
Yes |
delete_array_elements_by_indexes |
|
306
|
1 |
Yes |
extract_parameters_from_string |
|
340
|
1 |
Yes |
get_parameters_from_file |
|
381
|
1 |
Yes |
get_list_from_file |
|
409
|
1 |
Yes |
get_column_data |
|
450
|
1 |
Yes |
read_json_file |
|
475
|
1 |
Yes |
write_json_file |
|
479
|
1 |
n/a |
BEGIN |
|
497
|
0 |
Yes |
run |
|
537
|
0 |
Yes |
run_time |
|
563
|
0 |
Yes |
readable_second |
|
607
|
0 |
Yes |
check_positive_integer |
|
622
|
0 |
Yes |
mean_and_stdev |
|
646
|
0 |
Yes |
filename_prefix |
|
662
|
0 |
Yes |
check_all_files_exist |
|
682
|
0 |
Yes |
check_in_out_dir |
|
706
|
0 |
Yes |
rm_and_mkdir |
|
729
|
0 |
Yes |
get_paired_fq_gz_file_from_dir |
|
741
|
0 |
No |
get_paired_fa_gz_file_from_dir |