| blib/lib/BioUtil/Seq.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| subroutine | 14 | 24 | 58.3 |
| pod | 15 | 17 | 88.2 |
| line | count | pod | subroutine |
|---|---|---|---|
| 26 | 1 | n/a | BEGIN |
| 28 | 1 | n/a | BEGIN |
| 29 | 1 | n/a | BEGIN |
| 30 | 1 | n/a | BEGIN |
| 32 | 1 | n/a | BEGIN |
| 119 | 2 | Yes | FastaReader |
| 140 | 6 | n/a | __ANON__ |
| 175 | 0 | No | FastaReader_old |
| 190 | 0 | n/a | __ANON__ |
| 235 | 2 | Yes | read_sequence_from_fasta_file |
| 259 | 1 | Yes | write_sequence_to_fasta_file |
| 284 | 2 | Yes | format_seq |
| 320 | 2 | Yes | validate_sequence |
| 360 | 1 | Yes | complement |
| 375 | 1 | Yes | revcom |
| 388 | 1 | Yes | base_content |
| 405 | 0 | Yes | degenerate_seq_to_regexp |
| 437 | 0 | Yes | match_regexp |
| 458 | 0 | Yes | dna2peptide |
| 475 | 0 | Yes | codon2aa |
| 563 | 0 | Yes | generate_random_seqence |
| 584 | 0 | No | shuffle_sequences |
| 609 | 0 | Yes | rename_fasta_header |
| 651 | 0 | Yes | clean_fasta_header |