| blib/lib/Bio/Tools/Run/Phylo/Molphy/ProtML.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 4 | 30 | 13.3 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 232 | 0 | 0 | 0 | $a =~ /^\d+$/ and $a >= 0 |
| 0 | 0 | 0 | $a =~ /^\d+$/ and $a >= 0 and $a <= 100 | |
| 397 | 0 | 0 | 0 | $tree and defined $flags{'search'} eq 'u' |
| 434 | 0 | 0 | 0 | ref $aln and $aln->isa('Bio::Align::AlignI') |
| 460 | 0 | 0 | 0 | ref $tree and $tree->isa('Bio::Tree::TreeI') |
| 510 | 0 | 0 | 4 | defined $type and defined $param |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 525 | 0 | 4 | 0 | $self->no_param_checks or defined $Bio::Tools::Run::Phylo::Molphy::ProtML::VALIDFLAGS{$type}{$param} |
| 530 | 2 | 0 | 0 | $Bio::Tools::Run::Phylo::Molphy::ProtML::VALIDFLAGS{$type}{$param} or $param |
| 532 | 2 | 0 | 0 | $Bio::Tools::Run::Phylo::Molphy::ProtML::VALIDFLAGS{$type}{$param} || $param |
| 576 | 0 | 0 | 0 | $self->no_param_checks or defined $Bio::Tools::Run::Phylo::Molphy::ProtML::VALIDVALUES{$param} |