| blib/lib/Bio/Tools/Run/Phylo/Hyphy/Base.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| subroutine | 10 | 24 | 41.6 |
| pod | 17 | 17 | 100.0 |
| line | count | pod | subroutine |
|---|---|---|---|
| 78 | 1 | n/a | BEGIN |
| 79 | 1 | n/a | BEGIN |
| 80 | 1 | n/a | BEGIN |
| 81 | 1 | n/a | BEGIN |
| 82 | 1 | n/a | BEGIN |
| 83 | 1 | n/a | BEGIN |
| 98 | 1 | n/a | BEGIN |
| 114 | 6 | Yes | program_name |
| 129 | 0 | Yes | valid_values |
| 143 | 3 | Yes | program_dir |
| 165 | 0 | Yes | new |
| 186 | 0 | Yes | prepare |
| 244 | 0 | Yes | create_wrapper |
| 299 | 0 | Yes | run |
| 359 | 0 | Yes | error_string |
| 380 | 0 | Yes | alignment |
| 410 | 0 | Yes | tree |
| 434 | 0 | Yes | get_parameters |
| 459 | 0 | Yes | set_parameter |
| 479 | 1 | Yes | set_default_parameters |
| 522 | 0 | Yes | update_ordered_parameters |
| 546 | 0 | Yes | outfile_name |
| 565 | 0 | Yes | version |
| 600 | 0 | Yes | hyphy_lib_dir |