| line |
true |
false |
branch |
|
236
|
0 |
0 |
if (@_) |
|
240
|
0 |
0 |
if (ref $thing and $thing->isa('Bio::SeqFeatureI')) { } |
|
|
0 |
0 |
elsif (-e $thing) { } |
|
252
|
0 |
0 |
if (keys %feats) |
|
267
|
0 |
0 |
if (defined $self->{'annots'}) |
|
311
|
0 |
0 |
unless $aln and $tree |
|
347
|
0 |
0 |
unless chdir $temp_dir |
|
355
|
0 |
0 |
unless open my $tfhandle, '>', $tree_file |
|
362
|
0 |
0 |
unless open PIPE, "$command |" |
|
365
|
0 |
0 |
unless $self->quiet |
|
366
|
0 |
0 |
if (/^ERROR: (.+)/ or /^mbgumbel\(\): (.+)/) |
|
370
|
0 |
0 |
$error ? : |
|
|
0 |
0 |
unless close PIPE |
|
380
|
0 |
0 |
unless -e $file |
|
396
|
0 |
0 |
unless chdir $cwd |
|
414
|
0 |
0 |
$^O =~ /mswin/i ? : |
|
422
|
0 |
0 |
if $self->quiet |