| line |
true |
false |
branch |
|
212
|
0 |
3 |
if $ENV{'PHYLIPDIR'} |
|
223
|
0 |
4 |
if $attr =~ /^-/ |
|
224
|
1 |
3 |
if ($attr =~ /IDLENGTH/i) |
|
238
|
0 |
3 |
unless $Bio::Tools::Run::Phylo::Phylip::ProtPars::OK_FIELD{$attr} |
|
239
|
3 |
0 |
if @_ |
|
256
|
1 |
0 |
if (@_) |
|
295
|
0 |
0 |
unless ($infilename) |
|
350
|
0 |
0 |
unless ('File::Spec'->file_name_is_absolute($infile)) |
|
357
|
0 |
0 |
if ($self->quiet or $self->verbose < 0) { } |
|
358
|
0 |
0 |
$^O =~ /mswin/i ? : |
|
371
|
0 |
0 |
unless -e $treefile |
|
378
|
0 |
0 |
unless ($self->save_tempfiles) |
|
407
|
0 |
0 |
unless (ref $input) |
|
410
|
0 |
0 |
unless (-e $input) |
|
415
|
0 |
0 |
if ($input->isa('Bio::Align::AlignI')) |
|
449
|
0 |
0 |
unless defined $value |
|
450
|
0 |
0 |
if ($attr =~ /JUMBLE/i) { } |